runRetroMults: Wrapper to run ASAP retrospective across range of multipliers...

In cmlegault/rose: Develop Rose ensemble of ASAP models with no retrospective pattern.

Description

Scenarios defined by ramp (number of years included in ramp of multipliers), change year, catch multipliers, natural mortality multipliers, natural mortality selectivty (maximum value should be 1, minimum value allowed is zero), and index multipliers. Uses Mohn's rho for spawning stock biomass as the metric of removing retrospective pattern (when ssbrho = 0).

Usage

runRetroMults(scenario.name, asap.fname, n.peels, ramp, year.vals,
  cmult.vals, mmult.vals, mselx, mselxlab, imult.vals,
  save.files = FALSE)

Arguments

scenario.name	character describes the runs in words to distinguish from other sets of runs
asap.fname	character name of asap dat file (including extension)
n.peels	integer number of peels used to compute Mohn's rho
ramp	integer number of years in ramp (0 means immediate jump to multiplied value)
year.vals	vector of change years
cmult.vals	vector of catch multipliers
mmult.vals	vector of natural mortality (M) multipliers
mselx	vector of selectivity at age to mutiply mmult by (allows additional mortality to be for all ages equally, focused on young ages, focused on old ages, etc.)
mselxlab	character describes natural mortality selectivity used
imult.vals	vector of index multipliers
save.files	logical TRUE means keep all retrospective files, default FALSE removes all files

Value

data frame of scenario, change year, ramp, catch multiplier, M multiplier, M selectivity label, and Mohn's rho for SSB

cmlegault/rose documentation built on Jan. 8, 2020, 11:24 p.m.