Man pages for cmu-delphi/epiprocess
Tools for basic signal processing in epidemiology

apply_compactifyGiven a tibble as would be found in an epi_archive, remove...
arrange_canonicalArrange an epi_df into a standard order
assert_sufficient_f_argsAssert that a sliding computation function takes enough args
as_slide_computationGenerate a epi[x]_slide computation function from a function,...
as_tibble.epi_dfConvert to tibble
as_tsibble.epi_dfConvert to tsibble format
autoplot.epi_dfAutomatically plot an epi_df
check_ukey_uniqueCheck that a unique key is indeed unique in a tibble...
cloneClone an 'epi_archive' object.
complete.epi_df"Complete" an 'epi_df', adding missing rows and/or replacing...
decay_epi_dfDrop any 'epi_df' metadata and class on a data frame
deprecated_quo_is_present'lifecycle::is_present' for enquosed deprecated NSE arg
detect_outlrDetect outliers
difftime_approx_ceiling_time_deltaClosest time_delta that's approximately greater than or equal...
dplyr_reconstruct.epi_dfdplyr_reconstruct
epi_archive'epi_archive' object
epi_corCompute correlations between variables in an 'epi_df' object
epi_dfTest for 'epi_df' format
epiprocess-packageepiprocess: Tools for basic signal processing in epidemiology
epi_slideSlide a function over variables in an 'epi_df' object
epi_slide_optOptimized slide functions for common cases
epix_as_ofGenerate a snapshot from an 'epi_archive' object
epix_fill_through_versionFill 'epi_archive' unobserved history
epix_mergeMerge two 'epi_archive' objects
epix_slideSlide a function over variables in an 'epi_archive' or...
epix_truncate_versions_afterFilter an 'epi_archive' object to keep only older versions
f_no_nause when the default behavior returns a warning on empty...
format_chr_deparseFormat a character vector as a string via deparsing it
format_chr_with_quotesFormat a character vector as a string via deparsing/quoting...
format_tibble_rowFormat a tibble row as chr
format_time_deltaFormat a length-1 time delta to a character to assist...
format_varname"Format" column/variable name for cli interpolation
format_varnames"Format" a character vector of column/variable names for cli...
full_date_seqMake a complete date sequence between min(x$time_value) and...
geo_column_namespotential geo_value columns
get_last_runreturn the first value in values_from from the last string of...
group_by.epi_archive'group_by' and related methods for 'epi_archive',...
group_epi_dfGroup an 'epi_df' object by default keys
growth_rateEstimate growth rate
growth_rate_paramsOptional parameters for growth rate methods
guess_column_namerename potential time_value columns
guess_periodUse max valid period as guess for 'period' of 'time_values'
is_locfChecks to see if a value in a vector is LOCF
key_colnamesGet names of columns that form a (unique) key associated with...
lag_within_x_latestpull the value from lags when values starts indefinitely...
max_version_with_row_in'max(x$version)', with error if 'x' has 0 rows
next_afterGet the next possible value greater than 'x' of the same type
n_steps_to_time_deltaConvert from integerish/infinite/mix to time_delta
num_percentsimple util for printing a fraction and it's percent
paste_linesPaste 'chr' entries (lines) together with '"\n"' separators,...
pipePipe operator
print.epi_archivePrint information about an 'epi_archive' object
print.epi_dfBase S3 methods for an 'epi_df' object
reexportsObjects exported from other packages
removed_by_compactifyget the entries that 'compactify' would remove
revision_summaryA function to describe revision behavior for an archive.
sum_groups_epi_dfAggregate an 'epi_df' object
test_sensible_intIs 'x' an "int" with a sensible class? TRUE/FALSE
time_column_namespotential time_value columns
time_delta_standardizeStandardize time_deltas to a multiple of 'unit_time_delta()'
time_delta_summaryLike 'summary' but working across all "time deltas",...
time_delta_to_approx_difftimeConvert 'time_delta' to an approximate difftime
time_delta_to_n_stepsConvert a time delta to a integerish number of "unit" steps...
time_minus_time_in_n_stepsDifference between two time value vectors in terms of number...
time_plus_n_stepsAdvance/retreat time_values by specified number of time...
time_type_unit_abbrGet an abbreviation for the "units" of...
time_type_unit_abbrsHelper data for 'time_type_unit_abbr'
time_type_unit_pluralizerHelper data for 'format_time_delta'
unit_time_deltaObject that, added to time_values of time_type, advances by...
unwrapExtract singular element of a length-1 unnamed list...
upcase_snake_casegiven a vector of characters, add the same values, but...
update_is_locfInternal helper; lgl; which updates are LOCF
validate_slide_window_argValidate '.before' or '.window_size' argument
validate_version_boundValidate a version bound arg
version_column_namespotential version columns
wrap_symbolicsLine wrap list holding symbolic, with prefix&indent
wrap_varnamesLine wrap 'chr' holding variable/column/other names, with...
cmu-delphi/epiprocess documentation built on Feb. 22, 2025, 9:26 a.m.