API for cmujzbit/OmicsON
OmicsON is a package implementing workflow for finding associations acrossomics data sets
| Global functions | |
|---|---|
| .onLoad | Source code |
| biopaxExporter | Source code |
| checkIfPathwayIdExistsForChEBIId | Source code |
| clusterUsingOntology | Man page Source code |
| createFunctionalInteractionsDataFrame | Man page |
| decorateByReactomeData | Man page Source code |
| decorateByStringDbData | Man page Source code |
| error | Source code |
| firstExistsInReactomeChebiOntology | Man page Source code |
| frontPageItems | Source code |
| getChEBIOntologyChildren | Source code |
| getChEBIOntologyParents | Source code |
| getDiseases | Source code |
| getEnsemblIdsForPathway | Source code |
| getEnsemblIdsForPathwayId | Source code |
| getEnsemblIdsForPathwayIds | Source code |
| getEnsemblProteinsIdsBaseOnEnsemblGensIdsUsingMyGenePackage | Source code |
| getPathwaysIdsForChEBI | Source code |
| getPathwaysIdsForChEBIAndOrganismCode | Source code |
| getPathwaysIdsForChebiId | Source code |
| getPathwaysIdsForChebiUnderOrganism | Source code |
| getReferenceMolecules | Source code |
| getStringNeighbours | Man page Source code |
| getSymbolsBaseOnEnsemblGensIdsUsingMyGenePackage | Source code |
| getSymbolsBaseOnEnsemblPeptidIdsUsingMyGenePackage | Man page Source code |
| getSymbolsBaseOnUniProtIdsUsingMyGenePackage | Source code |
| getUniProtIdsForPathwayId | Source code |
| getUniProtIdsForPathwayIds | Source code |
| getUniProtRefSeqs | Source code |
| getUsablePathwaysIdsForChEBIForAllOrganisms | Source code |
| highlightPathwayDiagram | Source code |
| listByQuery | Source code |
| makeCCAOnGroups | Man page Source code |
| makeCanonicalCorrelationAnalysis | Man page Source code |
| makePLSOnGroups | Man page |
| makePartialLeastSquaresRegression | Man page |
| makePermutationTestOnCCA | Man page Source code |
| makePermutationTestOnPLS | Man page |
| mapFromStringIdsToEnsembleIds | Man page Source code |
| mapReactomePathwaysUnderOrganism | Man page Source code |
| mergeChEBIOntologyWithChildFavoring | Man page Source code |
| pathwayComplexes | Source code |
| pathwayDiagram | Source code |
| pathwayHierarchy | Source code |
| pathwayParticipants | Source code |
| pathwaysForEntitie | Source code |
| plotCanonicalCorrelationAnalysisResults | Man page |
| plotRegression | Man page |
| plotRmsepForPLS | Man page |
| queryById | Source code |
| queryByIds | Source code |
| queryHitPathways | Source code |
| queryPeopleByEmail | Source code |
| queryPeopleByName | Source code |
| queryReviewedPathways | Source code |
| readGroupsAsDf | Man page Source code |
| reduceCorrelation | Source code |
| removeDuplicates | Source code |
| removeNA | Source code |
| sbmlExporter | Source code |
| setUpReactomeMapping | Man page Source code |
| speciesList | Source code |
| stringResponseBodyToDataFrame | Source code |
| warning | Source code |
