createFunctionalInteractionsDataFrame: Create a functional interactions data frame.

In cmujzbit/OmicsON: OmicsON is a package implementing workflow for finding associations acrossomics data sets

Description

You can create a functional interactions data frame from returned decorated data frames using this function. All analytical functions works on functional interactions data frames for more generic approach. In general this functions split mapping one to many for bench of mappings one to one.

Usage

createFunctionalInteractionsDataFrame(chebiToReactomeDataFrame,
  singleIdColumnName = "ontologyId", idsListColumnName = "ensembleIds",
  attachRootColumn = TRUE, rootIdCollumnName = "root")

Arguments

chebiToReactomeDataFrame	A data frame returned from any of decorated functions.
singleIdColumnName	Column with single ids per row.
idsListColumnName	Column with multiple, list of ids per row.
attachRootColumn	Use if you are interesting in attaching of root column into results.
rootIdCollumnName	Name used in returned data frame for representation of root data column.

Value

Functional interactions data frame.

Examples

ontology2EnsembleFunctionalInteractions <- OmicsON::createFunctionalInteractionsDataFrame(
chebiToReactomeDataFrame = decoratedByReactome,
singleIdColumnName = 'ontologyId', idsListColumnName = 'ensembleIds')

cmujzbit/OmicsON documentation built on May 12, 2020, 8:06 p.m.