Files in cmujzbit/OmicsON
OmicsON is a package implementing workflow for finding associations acrossomics data sets
.gitignore
DESCRIPTION
NAMESPACE
ONION.Rproj
R/Chebi.R
R/ChebiReactomeOntology.R
R/MapReactome.R
R/NewPublicApi.R
R/Reactome.R
R/SimilarityClustering.R
R/Utils.R
README.txt
experiment/experiment_human_vs_mouse_pathways.R
inst/extdata/nm-lipidomics-min.txt
inst/extdata/nm-lipidomics.txt
inst/extdata/nm-transcriptomics-min.txt
inst/extdata/nm-transcriptomics.txt
inst/resources/ChEBI2Reactome.txt
inst/resources/Ensembl2Reactome.txt
inst/resources/UniProt2Reactome.txt
man/clusterUsingOntology.Rd
man/createFunctionalInteractionsDataFrame.Rd
man/decorateByReactomeData.Rd
man/decorateByStringDbData.Rd
man/firstExistsInReactomeChebiOntology.Rd
man/getStringNeighbours.Rd
man/getSymbolsBaseOnEnsemblPeptidIdsUsingMyGenePackage.Rd
man/makeCCAOnGroups.Rd
man/makeCanonicalCorrelationAnalysis.Rd
man/makePLSOnGroups.Rd
man/makePartialLeastSquaresRegression.Rd
man/makePermutationTestOnCCA.Rd
man/makePermutationTestOnPLS.Rd
man/mapFromStringIdsToEnsembleIds.Rd
man/mapReactomePathwaysUnderOrganism.Rd
man/mergeChEBIOntologyWithChildFavoring.Rd
man/plotCanonicalCorrelationAnalysisResults.Rd
man/plotRegression.Rd
man/plotRmsepForPLS.Rd
man/readGroupsAsDf.Rd
man/setUpReactomeMapping.Rd
tests/testthat.R
vignettes/.gitignore
vignettes/OmicsON.Rmd
