Man pages for cmujzbit/OmicsON
OmicsON is a package implementing workflow for finding associations acrossomics data sets

clusterUsingOntologyOmicsON - private function.
createFunctionalInteractionsDataFrameCreate a functional interactions data frame.
decorateByReactomeDataDecorate data by data presented in Reactome database.
decorateByStringDbDataDecorate data from previous step (Reactome decoration) by...
firstExistsInReactomeChebiOntologyOmicsON - private function.
getStringNeighboursOmicsON - private function.
getSymbolsBaseOnEnsemblPeptidIdsUsingMyGenePackageOmicsON - private function.
makeCanonicalCorrelationAnalysisCalculate CCA on data returned from decoration methods.
makeCCAOnGroupsOmicsON - private function.
makePartialLeastSquaresRegressionCalculate PLS on data returned from decoration methods.
makePermutationTestOnCCAOmicsON - private function.
makePermutationTestOnPLSOmicsON - private function.
makePLSOnGroupsOmicsON - private function.
mapFromStringIdsToEnsembleIdsOmicsON - private function.
mapReactomePathwaysUnderOrganismOmicsON - private function.
mergeChEBIOntologyWithChildFavoringOmicsON - private function.
plotCanonicalCorrelationAnalysisResultsPlot CCA analysis results.
plotRegressionPlot PLS analysis results.
plotRmsepForPLSPlot RMSEP for PLS analysis results.
readGroupsAsDfOmicsON - private function.
setUpReactomeMappingSet up space of mappings in package.
cmujzbit/OmicsON documentation built on May 12, 2020, 8:06 p.m.