clusterUsingOntology | OmicsON - private function. |
createFunctionalInteractionsDataFrame | Create a functional interactions data frame. |
decorateByReactomeData | Decorate data by data presented in Reactome database. |
decorateByStringDbData | Decorate data from previous step (Reactome decoration) by... |
firstExistsInReactomeChebiOntology | OmicsON - private function. |
getStringNeighbours | OmicsON - private function. |
getSymbolsBaseOnEnsemblPeptidIdsUsingMyGenePackage | OmicsON - private function. |
makeCanonicalCorrelationAnalysis | Calculate CCA on data returned from decoration methods. |
makeCCAOnGroups | OmicsON - private function. |
makePartialLeastSquaresRegression | Calculate PLS on data returned from decoration methods. |
makePermutationTestOnCCA | OmicsON - private function. |
makePermutationTestOnPLS | OmicsON - private function. |
makePLSOnGroups | OmicsON - private function. |
mapFromStringIdsToEnsembleIds | OmicsON - private function. |
mapReactomePathwaysUnderOrganism | OmicsON - private function. |
mergeChEBIOntologyWithChildFavoring | OmicsON - private function. |
plotCanonicalCorrelationAnalysisResults | Plot CCA analysis results. |
plotRegression | Plot PLS analysis results. |
plotRmsepForPLS | Plot RMSEP for PLS analysis results. |
readGroupsAsDf | OmicsON - private function. |
setUpReactomeMapping | Set up space of mappings in package. |
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