Files in cobrbra/ICBioMark
Data-Driven Design of Targeted Gene Panels for Estimating Immunotherapy Biomarkers
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
ICBioMark.Rproj
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/ICBioMark.R
R/ensembl_gene_lengths.R
R/example_data.R
R/gen_model.R
R/generate_maf_data.R
R/maf_to_tables.R
R/metrics.R
R/nsclc_data.R
R/predict.R
README.Rmd
README.md
cran-comments.md
data-raw/ensembl_gene_lengths.R
data-raw/example_first_pred_tmb.R
data-raw/example_gen_model.R
data-raw/example_maf_data.R
data-raw/example_predictions.R
data-raw/example_refit_panel.R
data-raw/example_refit_range.R
data-raw/example_tables.R
data-raw/example_tib_tables.R
data-raw/example_tmb_tables.R
data-raw/nsclc_maf.R
data-raw/nsclc_survival.R
data/ensembl_gene_lengths.rda
data/example_first_pred_tmb.rda
data/example_gen_model.rda
data/example_maf_data.rda
data/example_predictions.rda
data/example_refit_panel.rda
data/example_refit_range.rda
data/example_tables.rda
data/example_tib_tables.rda
data/example_tmb_tables.rda
data/nsclc_maf.rda
data/nsclc_survival.rda
man/ICBioMark.Rd
man/ensembl_gene_lengths.Rd
man/example_first_pred_tmb.Rd
man/example_gen_model.Rd
man/example_maf_data.Rd
man/example_predictions.Rd
man/example_refit_panel.Rd
man/example_refit_range.Rd
man/example_tables.Rd
man/example_tib_tables.Rd
man/example_tmb_tables.Rd
man/figures/README-example_gen_model-1.png
man/figures/README-example_predictions-1.png
man/fit_gen_model.Rd
man/fit_gen_model_uninteract.Rd
man/fit_gen_model_unisamp.Rd
man/generate_maf_data.Rd
man/get_K.Rd
man/get_auprc.Rd
man/get_biomarker_from_maf.Rd
man/get_biomarker_tables.Rd
man/get_gen_estimates.Rd
man/get_mutation_dictionary.Rd
man/get_mutation_tables.Rd
man/get_p.Rd
man/get_panels_from_fit.Rd
man/get_predictions.Rd
man/get_r_squared.Rd
man/get_stats.Rd
man/get_table_from_maf.Rd
man/nsclc_maf.Rd
man/nsclc_survival.Rd
man/pred_first_fit.Rd
man/pred_intervals.Rd
man/pred_refit_panel.Rd
man/pred_refit_range.Rd
man/vis_model_fit.Rd
tests/testthat.R
tests/testthat/datatest_table.rds
tests/testthat/test-gen_model.R
tests/testthat/test-generate_maf_data.R
tests/testthat/test-maf_to_tables.R
tests/testthat/test-metrics.R
tests/testthat/test-predict.R
