API for cole-trapnell-lab/garnett
Automated cell type classification
| Global functions | |
|---|---|
| Parser | Man page |
| add_cell_rule | Source code |
| add_cell_type | Source code |
| aggregate_positive_markers | Source code |
| assemble_logic | Source code |
| assign_type | Source code |
| cds_to_other_id | Source code |
| cell_rules | Man page |
| cell_rules-class | Man page |
| check_marker_conversion | Source code |
| check_markers | Man page Source code |
| classify_cells | Man page Source code |
| collect_gene_names | Source code |
| convert_gene_ids | Source code |
| error | Source code |
| garnett | Man page |
| garnett-package | Man page |
| garnett_classifier | Man page |
| garnett_classifier-class | Man page |
| gene_rule-class | Man page |
| get_classifier_references | Man page Source code |
| get_communities | Source code |
| get_feature_genes | Man page Source code |
| get_internal | Source code |
| get_leaves | Source code |
| get_negative_markers | Source code |
| get_rule_multiplier | Source code |
| get_training_sample | Source code |
| make_name_map | Source code |
| make_predictions | Source code |
| new_garnett_classifier | Source code |
| parse_input | Source code |
| plot_markers | Man page Source code |
| run_classifier | Source code |
| test_cds | Man page |
| test_classifier | Man page |
| train_cell_classifier | Man page Source code |
