cell_rules: cell_rules class

In cole-trapnell-lab/garnett: Automated cell type classification

cell_rules class

Description

Representation of cell type derived from marker file.

Slots

name

character. Name of the cell type.

gene_names

character. A list of all of the genes included in the definition.

expressed

character. A list of genes defined as "expressed:".

not_expressed

character. A list of genes defined as "not expressed:".

gene_rules

vector of GeneRules-class. A list of genes defined under specific rules using "expressed below:", "expressed above:", or "expressed between:".

meta

data.frame of meta data rules specified in marker file.

parenttype

character. The name of the parent type - specified by "subtype of:".

references

character. A list of references included in the definition.

cole-trapnell-lab/garnett documentation built on Jan. 6, 2025, 2:18 p.m.