Files in cole-trapnell-lab/garnett
Automated cell type classification
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/submit-a-classifier.md
.github/workflows/check-standard.yaml
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/cell_rules.R
R/classify_cells.R
R/data.R
R/garnett.R
R/garnett_classifier.R
R/gene_rule.R
R/get_training_sample.R
R/methods-cell_rules.R
R/methods-garnett_classifier.R
R/parser.R
R/train_cell_classifier.R
R/utils.R
README.md
code-of-conduct.md
data/test_cds.rda
data/test_classifier.rda
garnett.Rproj
inst/CITATION
inst/extdata/exprs_sparse.mtx
inst/extdata/fdata.txt
inst/extdata/pbmc_bad_markers.txt
inst/extdata/pbmc_test.txt
inst/extdata/pdata.txt
man/Parser.Rd
man/cell_rules.Rd
man/check_markers.Rd
man/classify_cells.Rd
man/garnett-package.Rd
man/garnett_classifier.Rd
man/gene_rule-class.Rd
man/get_classifier_references.Rd
man/get_feature_genes.Rd
man/plot_markers.Rd
man/test_cds.Rd
man/test_classifier.Rd
man/train_cell_classifier.Rd
tests/bad_parse1.txt
tests/bad_parse2.txt
tests/ensembl_test.txt
tests/figs/deps.txt
tests/figs/test-utils-r/basic-marker-plot-change-amb.svg
tests/figs/test-utils-r/basic-marker-plot.svg
tests/good_parse.txt
tests/logic_test.txt
tests/pbmc_1mark.txt
tests/pbmc_get_training.txt
tests/pbmc_get_training_bad.txt
tests/pbmc_get_training_bad2.txt
tests/pbmc_test.txt
tests/pbmc_test_dos.txt
tests/testthat.R
tests/testthat/_snaps/utils/basic-marker-plot-change-amb.svg
tests/testthat/_snaps/utils/basic-marker-plot.svg
tests/testthat/test-classify_cells.R
tests/testthat/test-get_training_sample.R
tests/testthat/test-overall.R
tests/testthat/test-parser.R
tests/testthat/test-train_cell_classifier.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/website-vignette.Rmd
