AgeModel: Stochastic SRA to calculate the trajectory given parameters

Description Usage Arguments

Description

Stochastic SRA to calculate the trajectory given parameters

Usage

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AgeModel(Catch, AgeMat, Steep, NatMort, AgeMax, Carry, Weight, InitialDeplete,
  Sigma, AgeVulnOffset = -1, ProcessError = TRUE, simulation = NULL)

Arguments

Catch

To do

AgeMat

Age at maturity

Steep

Steepness

NatMort

Natural mortality

AgeMax

Maximum age, above which there is a plus group.

Carry

Carrying capacity.

Weight

Vector of weights at age, calculated from growth parameters a and b.

InitialDeplete

Initial level of depletion.

Sigma

Process error variance, i.e. N(0,Sigma).

AgeVulnOffset

Optional parameter for specifying age at vulnerability, defaulting to AgeMat-1. See ?run.SIR for more info.

ProcessError

A flag for whether to include process error, defaults to TRUE.

simulation

A list with elements 'NYears' and 'FishMort'. If supplied the model will run a simulation under that level of U. It it designed to be used to test equilibrium conditions but can be expanded later for more expansive simulation testing.


colemonnahan/sraplus documentation built on May 14, 2019, 3:10 a.m.