DisplayCmatrix: Display a matrix of composite genetic effects

Description Usage Arguments Value Author(s) Examples

View source: R/DisplayCmatrix.R

Description

A data frame representing the c-matrix scaled to the midparent. Column names describe the composite effects. The argument "esd" should be used for species that do not have sex chromosomes.

Usage

1

Arguments

table

a character string specifying the sex determination system. Current options are "XY", ZW", "esd"

Value

M

mean

Aa

autosomal additive

Ad

autosomal dominance

Xa

X chromosome additive

Xd

X chromosome dominance

Ya

Y chromosome additive

Ca

cytotype additive

Mea

maternal effect additive

Med

maternal effect dominance

AaAa

autosomal additive by additive epistasis

AaAd

autosomal additive by dominance epistasis

AdAd

autosomal dominance by dominance epistasis

XaAa

X chromosome additive by autosomal additive epistasis

XaAd

X chromosome additive by autosomal dominance epistasis

XdAa

X chromosome dominance by autosomal additive epistasis

XdAd

X chromosome dominance by autosomal dominance epistasis

YaAa

Y chromosome additive by autosomal additive epistasis

YaAd

Y chromosome additive by autosomal dominance epistasis

YaXa

Y chromosome additive by X additive epistasis

CaAa

cytotype additive by autosomal additive epistasis

CaAd

cytotype additive by autosomal dominance epistasis

CaXa

cytotype additive by X chromosome additive epistasis

CaXd

cytotype additive by X chromosome dominance epistasis

CaYa

cytotype additive by Y chromosome additive epistasis

Author(s)

Heath Blackmon and Jeffery P. Demuth

Examples

1
cmat <- DisplayCmatrix("XY")

coleoguy/SAGA documentation built on June 12, 2017, 6:35 a.m.