sim_SIR: sim_SIR

In collinmmccabe/enss: Effective Network Size Simulation

sim_SIR

Description

sim_SIR simulates the spread of an infectious disease on a social network using the Susceptible-Infected-Removed compartmental model

Usage

sim_SIR(network_el, beta, gamma, intxn_per_day, days)

Arguments

network_el	an edgelist file generated by igraph
beta	a value from 0 to 1 indicating per contract probability of pathogen transmission
gamma	a value from 0 to 1 indicating daily probability of recovery/removal
intxn_per_day	the per capita interaction rate
days	the maximum number of days for which your simulation will run

Value

vector with 5 elements, 1: number of days simulation went for, 2: final number of susceptible individuals, 3: final number of infected individuals, 4: final number of number of removed individuals, 5: maximum number of infected inviduals at any timepoint

collinmmccabe/enss documentation built on May 5, 2024, 6:23 a.m.