API for comoto-pasteur-fr/DNABarcodeCompatibility
A Tool for Optimising Combinations of DNA Barcodes Used in Multiplexed Experiments on Next Generation Sequencing Platforms

Global functions
DNABarcodeCompatibility-package Man page
IlluminaIndexes Man page
IlluminaIndexesRaw Man page
any_different Source code
binary_word_into_numeric Source code
character_and_length_check Source code
character_check Source code
check_for_duplicate Source code
check_input_dataframe Source code
display_message Source code
distance_filter Man page Source code
entropy_max Source code
entropy_n_k Source code
entropy_result Source code
experiment_design Man page Source code
file_loading_and_checking Man page Source code
filter_combinations Source code
final_result Source code
final_result_dual Source code
get_all_combinations Man page Source code
get_all_combinations_0_channel Source code
get_all_combinations_1_channel Source code
get_all_combinations_2_channel Source code
get_all_combinations_4_channel Source code
get_combinations Source code
get_index_GC_content Source code
get_index_homopolymer Source code
get_random_combinations Man page Source code
get_random_combinations_0_channel Source code
get_random_combinations_1_channel Source code
get_random_combinations_2_channel Source code
get_random_combinations_4_channel Source code
get_result Source code
get_sequence_GC_content Source code
get_sequence_homopolymer Source code
has_signal_in_both_channels Source code
id_into_1_channel_image_1_binary_sequence Source code
id_into_1_channel_image_2_binary_sequence Source code
id_into_2_channel_image_1_binary_sequence Source code
id_into_2_channel_image_2_binary_sequence Source code
id_into_4_channel_binary_sequence Source code
index_binary_conversion_1_channel Source code
index_binary_conversion_2_channel Source code
index_binary_conversion_4_channel Source code
index_check Source code
index_distance Source code
is_a_good_combination Source code
is_a_good_combination_2 Source code
is_a_prime_number Source code
length_check Source code
list_of_good_combinations Source code
list_of_good_combinations_2 Source code
low_hamming_distance Source code
low_phaseshift_distance Source code
low_seqlev_distance Source code
matrix_id_to_1_channel_image_1_binary_sequence Source code
matrix_id_to_1_channel_image_2_binary_sequence Source code
matrix_id_to_2_channel_image_1_binary_sequence Source code
matrix_id_to_2_channel_image_2_binary_sequence Source code
matrix_id_to_binary_sequence Source code
multiplexing_level_set Source code
optimize_combinations Man page Source code
read_index Source code
recursive_entropy Source code
sample_and_multiplexing_level_check Source code
sample_number_check Source code
sequence_binary_conversion_1_channel_1 Source code
sequence_binary_conversion_1_channel_2 Source code
sequence_binary_conversion_2_channel_1 Source code
sequence_binary_conversion_2_channel_2 Source code
sequence_binary_conversion_4_channel Source code
sequences_character_check Source code
shannon_entropy Source code
unicity_check Source code
vectors_into_matrix Source code
comoto-pasteur-fr/DNABarcodeCompatibility documentation built on Dec. 2, 2018, 1:15 a.m.