Files in compgenomr/compGenomRData
Data for Computational Genomics with R book
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/hello.R
README.md
compGenomRData.Rproj
inst/extdata/CpGi.hg19.table.txt
inst/extdata/CpGi.table.hg18.txt
inst/extdata/CpGmeth2Age.rds
inst/extdata/H1.ESC.H3K27ac.chr20.bw
inst/extdata/H1.ESC.H3K4me3.chr20.bw
inst/extdata/H1.ESC.dnase.chr20.bw
inst/extdata/H1.chr21.chr22.rds
inst/extdata/HistoneModeVSgeneExp.rds
inst/extdata/LGGrnaseq.rds
inst/extdata/chip-seq/CTCF_peaks.txt
inst/extdata/chip-seq/GM12878_hg38_CTCF_r1.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_CTCF_r1.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_CTCF_r2.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_CTCF_r2.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_H3K27me3.chr21.bw
inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_H3K36me3.chr21.bw
inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_H3K4me1.chr21.bw
inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_H3K4me3.chr21.bw
inst/extdata/chip-seq/GM12878_hg38_Input_r1.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_Input_r1.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_Input_r2.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_Input_r2.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_Input_r3.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_Input_r3.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_Input_r4.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_Input_r4.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_Input_r5.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_Input_r5.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_POLR2A.chr21.bw
inst/extdata/chip-seq/GM12878_hg38_SMC3_r1.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_SMC3_r1.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_SMC3_r2.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_SMC3_r2.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_ZNF143_r1.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_ZNF143_r1.chr21.bam.bai
inst/extdata/chip-seq/GM12878_hg38_ZNF143_r2.chr21.bam
inst/extdata/chip-seq/GM12878_hg38_ZNF143_r2.chr21.bam.bai
inst/extdata/cpgi.hg19.chr21.bed
inst/extdata/geneExpMat.rds
inst/extdata/leukemiaExpressionSubset.rds
inst/extdata/multi-omics/COREAD_CMS13_cnv.csv
inst/extdata/multi-omics/COREAD_CMS13_gex.csv
inst/extdata/multi-omics/COREAD_CMS13_muts.csv
inst/extdata/multi-omics/COREAD_CMS13_subtypes.csv
inst/extdata/patient2LGGsubtypes.rds
inst/extdata/refseq.hg19.bed
inst/extdata/refseq.hg19.chr20.bed
inst/extdata/refseq.hg19.chr21.bed
inst/extdata/rn4.refseq.bed
inst/extdata/rn4.refseq2name.txt
inst/extdata/rna-seq/HK_genes.txt
inst/extdata/rna-seq/SRP021193.colData.tsv
inst/extdata/rna-seq/SRP021193.raw_counts.tsv
inst/extdata/rna-seq/SRP029880.colData.tsv
inst/extdata/rna-seq/SRP029880.raw_counts.tsv
inst/extdata/rna-seq/SRP049988.colData.tsv
inst/extdata/rna-seq/SRP049988.raw_counts.tsv
inst/extdata/subset.cpgi.hg18.bed
inst/extdata/subset.enhancers.hg18.bed
inst/extdata/subset.refseq.hg18.bed
inst/extdata/wgEncodeHaibTfbsA549.chr21.bw
inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xAlnRep1.chr21.bam
inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xAlnRep1.chr21.bam.bai
inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep1.broadPeak.gz
inst/extdata/wgEncodeHaibTfbsGm12878Sp1Pcr1xPkRep2.broadPeak.gz
inst/scripts/getData_genomicIntervals.R
inst/scripts/getData_statistics.R
man/hello.Rd
