ACTman | R Documentation |
ACTman manages actigraphy data whilst offering pre-processing and analyses options. This initial version supports the 'Actiwatch 2' and 'MotionWatch 8' actigraphy devices, whilst allowing for both sleep and circadian rhythm analyses.
ACTman(workdir = "C:/Bibliotheek/Studie/PhD/Publishing/ACTman/R-part/mydata2",
sleepdatadir = paste("C:/Bibliotheek/Studie/PhD/Publishing/",
"ACTman/R-part/Actogram & Sleep analysis", sep = ""),
myACTdevice = "Actiwatch2", iwantsleepanalysis = FALSE,
plotactogram = FALSE, selectperiod = FALSE, startperiod = NULL,
daysperiod = FALSE, endperiod = NULL, movingwindow = FALSE,
movingwindow.size = 14, movingwindow.jump = 1,
circadian_analysis = TRUE, nparACT_compare = FALSE, na_omit = FALSE,
na_impute = FALSE, missings_report = TRUE, lengthcheck = TRUE)
workdir |
The working directory of the script. |
sleepdatadir |
An optional vector specifying the directory for actogram and sleep analysis data. |
myACTdevice |
Name of the input device used. Should be either 'Actiwatch2' or 'MW8'. |
iwantsleepanalysis |
Boolean value indicating whether sleep analysis should be performed. |
plotactogram |
Value indicating if and what kind of actogram has to be plotted. Can be either '48h', '24h', or FALSE. |
selectperiod |
Boolean value indicating whether a specific period has to be selected. |
startperiod |
An optional vector specifying single or multiple period starts. Should be in the format "2016-10-03 00:00:00". |
daysperiod |
An optional vector specifying the length in days of the period. |
endperiod |
An optional argument that is a date string (format: "2016-10-03 00:00:00"), denoting the end of the data subset to be analyzed. Only used if daysperiod is not specified. |
movingwindow |
Boolean value indicating whether a moving window should be utilised. |
movingwindow.size |
An optional vector specifying the length in days of the moving window. Default is 14 days. |
movingwindow.jump |
An optional vector specifying the length of the jumps with which the moving window is shifted each iteration. Default is 1 day. |
circadian_analysis |
Boolean value indicating whether non-parametric circadian rhythm analysis should be performed. |
nparACT_compare |
Boolean value indicating that comparison with another actigraphy R package should be performed. If TRUE, the values for IS, IV, RA, L5, L5_starttime, M10, and M10_starttime of the nparACT_base_loop function are recorded in the returned overview variable. |
na_omit |
Boolean value indicating whether NA's should be omitted. |
na_impute |
Boolean value indicating whether NA's should be imputed. |
missings_report |
Boolean value indicating whether missings promt should appear. |
lengthcheck |
Boolean value. If TRUE, the dataset is shortened to the start date plus 14 days, and observations more than 14 days after the start date are removed. |
if iwantsleepanalysis, this returns the sleepdata overview, else if movingwindow, it returns the moving window results, and otherwise it returns the actdata overview.
## Not run:
View(ACTman::ACTman(workdir = "C:/Bibliotheek/Studie/PhD/Publishing/ACTman/R-part/mydata2",
myACTdevice = "Actiwatch2",
iwantsleepanalysis = FALSE,
plotactogram = FALSE,
selectperiod = FALSE,
startperiod = "2016-10-03 00:00:00",
daysperiod = 14, movingwindow = FALSE, circadian_analysis = TRUE))
## End(Not run)
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