README.md

In computational-chemical-biology/motifHeat:

motifHeat

Wrapper to format heamap from defined GNPS-MZmine inputs

Table of contents

• Installation
• Run motifHeat
• License

Installation

Install motifHeat with:

devtools::install_github("computational-chemical-biology/motifHeat")

Run motifHeat

To run motifHeat simply do:

# Load data from GNPS
dlist <- access_gnps('fe23366fb6e34bee84ac9c1d2c17f5ba',            
                      '7d7e7ed46a954dcbbf3b537e05c9792f')
tab <- dlist$features
meta <- dlist$metadata

# Define coloring scheme
factorColList <- list(list(colors=c("darkorchid","darkred"), factor='Extraction'), 
                      list(colors=c("green", "darkgreen"), factor='Trimethoprim'))

# Plot heatmap
h <- format_heatmap(tab, meta, selectField='StrainName', selectValue='Burkholderia dolosa AU0645  Genomovar type VI', 
                    factorColList=factorColList)

You should be able to generate the following image

License

This repository is available under the following license.

computational-chemical-biology/motifHeat documentation built on Feb. 3, 2020, 12:11 a.m.