Getfiles: Get files for DI-MS processing

In computational-metabolomics/msPurity: Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

Get files for DI-MS processing

Description

Takes in a folder path and outputs the a data frame structure for purityD. Function modified from mzmatch.

Usage

Getfiles(
  projectFolder = NULL,
  recursive = FALSE,
  pattern = ".csv",
  check = TRUE,
  raw = FALSE,
  peakout = NA,
  cStrt = TRUE,
  mzml_out = FALSE
)

Arguments

projectFolder	character; Directory path
recursive	boolean; Recursively check for files
pattern	character; File suffix to check for
check	boolean; Check with a GUI the files
raw	(REDUNDANT)
peakout	(REDUNDANT)
cStrt	boolean; Use the first word as the class name for files
mzml_out	(REDUNDANT)

Value

dataframe of files

Examples

datapth <- system.file("extdata", "dims", "mzML", package="msPurityData")
inDF <- Getfiles(datapth, pattern=".mzML", check = FALSE, cStrt = FALSE)

computational-metabolomics/msPurity documentation built on April 19, 2022, 10:21 a.m.