API for const-ae/proDD
Identifying Differentially Abundant Proteins from Label-Free Mass Spectrometry Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| as_replicate | Man page Source code |
| calc_df_eff | Man page Source code |
| calculate_posterior | Man page Source code |
| dist_approx | Man page Source code |
| dist_approx,MSnSet-method | Man page |
| dist_approx,SummarizedExperiment-method | Man page |
| distance_sq | Man page Source code |
| dprobdropout | Man page Source code |
| find_approx_for_missing | Man page Source code |
| fit_feature_mean_uncertainties | Man page Source code |
| fit_feature_means | Man page Source code |
| fit_feature_variances | Man page Source code |
| fit_global_dropout_curves | Man page Source code |
| fit_global_scale_dropout_curves | Man page Source code |
| fit_location_prior | Man page Source code |
| fit_parameters | Man page Source code |
| fit_parameters,MSnSet-method | Man page |
| fit_parameters,SummarizedExperiment-method | Man page |
| fit_sample_dropout_curves | Man page Source code |
| fit_unregularized_feature_means | Man page Source code |
| fit_unregularized_feature_variances | Man page Source code |
| fit_variance_prior | Man page Source code |
| format.prodd_parameters | Man page Source code |
| generate_synthetic_data | Man page Source code |
| invprobit | Man page Source code |
| is.prodd_parameters | Source code |
| is_valid_prodd_parameters | Source code |
| match_probdropout_skewed_normal | Man page Source code |
| mean_probdropout | Man page Source code |
| median_normalization | Man page Source code |
| median_normalization,MSnSet-method | Man page |
| median_normalization,SummarizedExperiment-method | Man page |
| mode_probdropout | Man page Source code |
| mply_dbl | Man page Source code |
| msply_dbl | Man page Source code |
| predict_feature_parameters | Man page Source code |
| print.prodd_parameters | Man page Source code |
| resampling_test | Man page Source code |
| resampling_test_impl | Source code |
| sample_protein_means | Man page Source code |
| sample_protein_means,MSnSet-method | Man page |
| sample_protein_means,SummarizedExperiment-method | Man page |
| test_diff | Man page Source code |
| transform_parameters | Man page Source code |
| variance_probdropout | Man page Source code |
