Files in const-ae/proDD
Identifying Differentially Abundant Proteins from Label-Free Mass Spectrometry Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/calculate_distance.R
R/calculate_posterior.R
R/fit_dropout_curves.R
R/fit_feature_parameters.R
R/fit_hyperparameters.R
R/normalization.R
R/probabilistic_dropouts.R
R/prodd_parameters.R
R/resampling_test.R
R/stanmodels.R
R/stats_functions.R
R/synthetic_data.R
R/util.R
R/zzz.R
README.Rmd
README.md
inst/extdata/proteinGroups.txt
inst/include/meta_header.hpp
man/as_replicate.Rd
man/calc_df_eff.Rd
man/calculate_posterior.Rd
man/dist_approx.Rd
man/distance_sq.Rd
man/dprobdropout.Rd
man/figures/README-unnamed-chunk-12-1.png
man/figures/README-unnamed-chunk-13-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-14-2.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-6-1.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/README-unnamed-chunk-9-2.png
man/find_approx_for_missing.Rd
man/fit_feature_mean_uncertainties.Rd
man/fit_feature_means.Rd
man/fit_feature_variances.Rd
man/fit_global_dropout_curves.Rd
man/fit_location_prior.Rd
man/fit_parameters.Rd
man/fit_unregularized_feature_means.Rd
man/fit_unregularized_feature_variances.Rd
man/fit_variance_prior.Rd
man/generate_synthetic_data.Rd
man/invprobit.Rd
man/match_probdropout_skewed_normal.Rd
man/mean_probdropout.Rd
man/median_normalization.Rd
man/mode_probdropout.Rd
man/mply_dbl.Rd
man/predict_feature_parameters.Rd
man/print.prodd_parameters.Rd
man/resampling_test.Rd
man/sample_protein_means.Rd
man/test_diff.Rd
man/transform_parameters.Rd
man/variance_probdropout.Rd
proDD.Rproj
src/.gitignore
src/Makevars
src/RcppExports.cpp
src/init.cpp
src/resampling_test.cpp
src/stan_files/batch_skewed_posterior.hpp
src/stan_files/batch_skewed_posterior.stan
src/stan_files/chunks/license.stan
tests/testthat.R
tests/testthat/test-calculate_distance.R
tests/testthat/test-calculate_posterior.R
tests/testthat/test-fit_dropout_curves.R
tests/testthat/test-fit_feature_parameters.R
tests/testthat/test-probabilistic_dropouts.R
tests/testthat/test-prodd_parameters.R
tests/testthat/test-resampling_test.R
tests/testthat/test-s4_objects.R
tests/testthat/test-stats_functions.R
tests/testthat/test-synthetic_data.R
tests/testthat/test-util.R
tools/make_cc.R
vignettes/.gitignore
vignettes/data-import.Rmd
