runQC: Conducts QC for Phase2 Data and Generates QC Reports

In covidclinical/PhaseX.2QualityControlRpackage: Generate the QC report for 4CE Phase 1.2 and Phase 2.2 data

Conducts QC for Phase2 Data and Generates QC Reports

Description

Conducts QC for Phase2 Data and Generates QC Reports

Usage

runQC(
  dir.input1.2,
  dir.input2.2 = NA,
  dir.output,
  select.all.cohorts = F,
  site.nm
)

Arguments

dir.input1.2	path that contains phase 1.2 data
dir.input2.2	path that contains phase 2.2 data, NA if 2.2 data is not available
dir.output	path to save the QC report
select.all.cohorts	equal to TRUE to display a summary report for all cohorts. FALSE by default, we display a report for 3 cohorts randomly sampled.
site.nm	4CE site ID (string)

Value

QC file

covidclinical/PhaseX.2QualityControlRpackage documentation built on April 14, 2022, 10:39 a.m.