Description Usage Arguments Value
Generates components that capture sources of variability that are
shared between two datasets. See https://github.com/cozygene/CONFINED
for more info.
1 |
X1 |
Input matrices. m by n_1 matrix. Must have the same number of rows as |
X2 |
Input matrices. m by n_2 matrix. Must have the same number of rows as |
t |
Number of rows (e.g. methylation sites) to use |
k |
Number of CONFINED components to produce (up to min{n_1, n_2 }) |
thresh |
Correlation threshold for selecting the number of canonical variables to use when generating the low-rank approximations in the feature selection step |
outfile |
Prefix for saving the results |
saveOP |
Boolean flag for saving the components/feature ranks to a txt file |
X1comps - CONFINED components for X1
. These capture shared variability between X1
and X2
X2comps - CONFINED components for X2
. These capture shared variability between X1
and X2
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