sweeperObj-class: sweeperObj

Description Slots

Description

This object is a generic object designed to run the different functions of the ms2sweeper package. The slots represent content or data that the package uses throughout the different functions.

Slots

features

- A table containing an m/z and rt column used to select specific features from ms2 data.

ms2Path

- A string vector of paths to the ms2 raw data files.

ms2Data

- The read in ms2 data.

harvestDaughters

- Harvested ms2 data for all inputed parent ions from features.

harvestParents

- Harvested parent ions corresponding to matched MS2 spectra.

ms2Pure

- list of purified ms2s based on the cleaning criterion.

outputPath

- Path to save text files for individual MS2 spectra.


crmclean/ms2sweeper documentation built on May 22, 2019, 2:44 p.m.