This object is a generic object designed to run the different functions of the ms2sweeper package. The slots represent content or data that the package uses throughout the different functions.
features
- A table containing an m/z and rt column used to select specific features from ms2 data.
ms2Path
- A string vector of paths to the ms2 raw data files.
ms2Data
- The read in ms2 data.
harvestDaughters
- Harvested ms2 data for all inputed parent ions from features.
harvestParents
- Harvested parent ions corresponding to matched MS2 spectra.
ms2Pure
- list of purified ms2s based on the cleaning criterion.
outputPath
- Path to save text files for individual MS2 spectra.
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