Files in csetraynor/iclust2prog
Prognostic modeling of IntClust-2 (iclust2prog)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
Plots/contrasts.pdf
Plots/contrasts.png
Plots/enrichMap.pdf
Plots/enrichMap.png
Plots/posterior.pdf
Plots/posterior.png
R/cindex.R
R/cox_deviance.R
R/data.R
R/fit.R
R/misc.R
R/ont_fun_search.R
R/post_drawn.R
R/tdbrier.R
R/tdroc.R
README.md
bayesplot.pdf
data/brca_glmnet.rda
data/clinical_data.rda
data/cna_names.rda
data/datalist
data/eph2n_glmnet.rda
data/erpos_glmnet.rda
data/gene_names.rda
data/ic2dat.rda
data/iclust2_glmnet.rda
data/iclust2_glmnet_72.rda
data/int_coeff_tab.rda
data/intclustdat.rda
data/pooled_glmnet.rda
data/rand_glmnet.rda
data/samp_glmnet.rda
data/sampdata.rda
data/sensitivitydata.rda
data/target_names.rda
data/treatment_effect.rda
docs/Gene sets/GSEA _ MSigDB _ MSigDB Collections_ Details and Acknowledgments.pdf
docs/Gene sets/HallMark_Gene_Symbol.gmt
docs/Gene sets/c1.all.v6.1.entrez.gmt
docs/Gene sets/c1.all.v6.1.symbols.gmt
docs/Gene sets/c2.all.v6.1.entrez.gmt
docs/Gene sets/c2.all.v6.1.symbols.gmt
docs/Gene sets/c2.cgp.v6.1.entrez (copy).gmt
docs/Gene sets/c2.cgp.v6.1.symbols.gmt
docs/Gene sets/c2.cp.biocarta.v6.1.entrez.gmt
docs/Gene sets/c2.cp.biocarta.v6.1.symbols.gmt
docs/Gene sets/c2.cp.kegg.v6.1.entrez.gmt
docs/Gene sets/c2.cp.kegg.v6.1.symbols.gmt
docs/Gene sets/c2.cp.reactome.v6.1.entrez.gmt
docs/Gene sets/c2.cp.reactome.v6.1.symbols.gmt
docs/Gene sets/c2.cp.v6.1.entrez.gmt
docs/Gene sets/c2.cp.v6.1.symbols.gmt
docs/Gene sets/c3.all.v6.1.entrez.gmt
docs/Gene sets/c3.all.v6.1.symbols.gmt
docs/Gene sets/c3.mir.v6.1.entrez.gmt
docs/Gene sets/c3.mir.v6.1.symbols.gmt
docs/Gene sets/c3.tft.v6.1.entrez.gmt
docs/Gene sets/c3.tft.v6.1.symbols.gmt
docs/Gene sets/c4.all.v6.1.entrez.gmt
docs/Gene sets/c4.all.v6.1.symbols.gmt
docs/Gene sets/c4.cgn.v6.1.entrez.gmt
docs/Gene sets/c4.cgn.v6.1.symbols.gmt
docs/Gene sets/c4.cm.v6.1.entrez.gmt
docs/Gene sets/c4.cm.v6.1.symbols.gmt
docs/Gene sets/c5.all.v6.1.entrez.gmt
docs/Gene sets/c5.all.v6.1.symbols.gmt
docs/Gene sets/c5.bp.v6.1.entrez.gmt
docs/Gene sets/c5.bp.v6.1.symbols.gmt
docs/Gene sets/c5.cc.v6.1.entrez.gmt
docs/Gene sets/c5.cc.v6.1.symbols.gmt
docs/Gene sets/c5.mf.v6.1.entrez.gmt
docs/Gene sets/c5.mf.v6.1.symbols.gmt
docs/Gene sets/c6.all.v6.1.entrez.gmt
docs/Gene sets/c6.all.v6.1.symbols.gmt
docs/Gene sets/c7.all.v6.1.entrez.gmt
docs/Gene sets/c7.all.v6.1.symbols.gmt
docs/Gene sets/h.all.v6.1.entrez.gmt
docs/Gene sets/h.all.v6.1.symbols.gmt
docs/explantab.R
docs/filter_data.R
docs/iclust_ontology.R
docs/milestones
iclust2prog.Rproj
man/cox_deviance.Rd
man/extract_features.Rd
man/gen_stan_dat.Rd
man/gene_names.Rd
man/get_cindex.Rd
man/hello.Rd
man/iclust2_glmnet.Rd
man/intclust2dat.Rd
man/map_pem.Rd
man/mg.Rd
man/mod_fit.Rd
man/my_replace.Rd
man/my_round.Rd
man/ontology_search.Rd
man/par.table.Rd
man/pooled_glmnet.Rd
man/post_tab.Rd
man/tdbrier.Rd
man/tdroc.Rd
vignettes/Bayesian_model_of_Cox_parameters.R
vignettes/Lasso_parallel.R
vignettes/Model_Comparision.R
vignettes/PosteriorCoxModelPredictors.R
vignettes/Search_ontology.R
vignettes/coeff_tab.csv
vignettes/dens1.pdf
vignettes/densplot1.pdf
vignettes/network.pdf
vignettes/network_plot.R
vignettes/sensitivity.R
vignettes/sensitivity2.pdf
vignettes/sensitivity3.pdf
vignettes/spider
