API for csf-ngs/illuminasavr
Parse and Plot illumina SAV interop binary metric files

Global functions
LOG Source code
addTiles Source code
basespaceUrl Source code
cbindLTC Source code
checkLTC Source code
correctedIntMetrics Source code
correctedIntensityMetricsParser2 Source code
createNARecords Source code
dropSplitTilesNames Source code
errorFile Source code
errorMetricsParser3 Source code
extractionMetrics Source code
extractionMetricsParser2 Source code
generateTileNames Source code
indexWeightedMedian Source code
joinLaneTileCycle Source code Source code
joinTileInfo Source code
lowerQualityBoundary Source code
ltc Source code
makeSite Source code
makeSiteInRunfolder Source code
mangleJpgPath Source code
metricsToJson Source code
parseCycleName Source code
parseFile Source code
parseLaneThumbnail Source code
parseMetricsLong Source code
parseMetricsWide Source code
parseRecords Source code
parseRunInfo Source code
parseRunParameters Source code
parseThumbnailFiles Source code
parseThumbnailName Source code
parseThumbnailNames Source code
qualityBinByteCount Source code
qualityMetrics Source code
qualityMetricsParser4 Source code
qualityMetricsParser5 Source code
readImagesInCycleFolder Source code
readMeta Source code
recordIndices Source code
remappedQualityBins Source code
setStatusFinished Source code
sortWide Source code
splitTiles Source code
splitTilesNames Source code
startBytesQualityBin Source code
tileMetrics Source code
tileMetricsParser2 Source code
upperQualityBoundary Source code
write.json Source code
writeThumbnailNames Source code
csf-ngs/illuminasavr documentation built on July 5, 2017, 6 a.m.