plot_deviation: Plot deviations
In csoneson/iCOBRA: Comparison and Visualization of Ranking and Assignment Methods

plot_deviation

R Documentation

Plot deviations

Description

Plot the deviations between observed scores and the continuous truth variable.

Usage

plot_deviation(
  cobraplot,
  title = "",
  stripsize = 15,
  titlecol = "black",
  xaxisrange = NULL,
  plottype = "boxplot",
  dojitter = TRUE,
  transf = "raw"
)

Arguments

`cobraplot`	A `COBRAPlot` object.
`title`	A character string giving the title of the plot.
`stripsize`	A numeric value giving the size of the strip text, when the results are stratified by an annotation.
`titlecol`	A character string giving the color of the title.
`xaxisrange`	A numeric vector with two elements, giving the lower and upper boundary of the x-axis, respectively.
`plottype`	Either "boxplot" or "violinplot", indicating what type of plot to make.
`dojitter`	A logical indicating whether to include jittered data points or not.
`transf`	A character indicating the transformation to apply to the deviations before plotting. Must be one of "raw", "absolute" or "squared"

Value

A ggplot object

Author(s)

Charlotte Soneson

Examples

data(cobradata_example)
cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC",
                                   aspects = "deviation")
cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2",
                                   incltruth = TRUE)
plot_deviation(cobraplot)

csoneson/iCOBRA documentation built on Nov. 5, 2024, 7:20 p.m.