Description Usage Arguments Author(s)
Plot coverage and gene model tracks
1 2 3 4 |
showGene |
Gene name or symbol for the gene to show in the plot. |
geneModels |
GRanges object with gene models, typically generated from a
gtf file (e.g. with the |
geneModels2 |
Second GRanges object with gene models, e.g. those that
were excluded from |
gtfFile |
GTF file from which |
bwFiles |
Named vector with paths to bigWig files. These will be used to generate coverage plots. |
bwCond |
Named vector corresponding to |
showChr |
Name of the chromosome to show in the plot, if |
minCoord, maxCoord |
Minimum and maximum genomic coordinate to show, if
|
pdfFilename |
File name of pdf file to which the plot should be saved.
If set to |
pdfWidth, pdfHeight |
Width and height of the pdf file to which the plot should be saved. |
... |
Additional arguments (not currently used) |
Charlotte Soneson
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