Man pages for ctkremer/growthTools
Tools for analyzing time series of microbial abundances to estimate growth rates
| abundance | Microbial abundance time series |
| decurve | Double exponential model |
| decurve2 | Double exponential model, phi version |
| deltavar2 | Delta method function (modified from emdbook) |
| detect | Detect model failure |
| example_TPC_data | Effect of temperature on phytoplankton growth rates |
| fd2.central | Approximate 2nd derivative (finite difference) |
| get.decurve.tpc | Fit Double Exponential curve to growth rate vs. temperature... |
| get.gr | Extract exponential growth rate assuming exponential growth |
| get.gr.flr | Extract exponential growth rate assuming exponential death... |
| get.gr.lag | Extract exponential growth rate assuming lagged exponential... |
| get.gr.lagsat | Extract exponential growth rate assuming lagged exponential... |
| get.growth.rate | Extract exponential growth rate from a time series of... |
| get.gr.sat | Extract exponential growth rate assuming exponential growth... |
| get.nbcurve.tpc | Fit Norberg curve to growth rate vs. temperature data |
| get.R2 | Calculate R2 |
| get.tlim | Calculate thermal niche limits |
| get.topt | Get optimum temperature from nbcurve.legacy() |
| growthTools | growthTools: A package for computing microbial growth rates... |
| lagsat | Equations for modeling abundace time series |
| localslope | Local Slope function |
| nbcurve | Re-parameterized Norberg functions |
| nbcurve.legacy | Norberg function |
| plot.decurve | Plotting function for single Double Exponential curve |
| plot.nbcurve | Plotting function for single Norberg curve |
| predict.decurve | Predict values from decurve fit |
| predict.nbcurve | Predict values from nbcurve fit |
| sqfunc | Helper function for smoothed lagged/saturating abundance... |
