get.decurve.tpc: Fit Double Exponential curve to growth rate vs. temperature...

In ctkremer/growthTools: Tools for analyzing time series of microbial abundances to estimate growth rates

Description

Fit Double Exponential curve to growth rate vs. temperature data

Usage

get.decurve.tpc(
  temperature,
  mu,
  method = "grid.mle2",
  start.method = "general.grid",
  plotQ = FALSE,
  conf.bandQ = TRUE,
  fpath = NA,
  id = NA,
  suppress.grid.mle2.warnings = TRUE,
  ...
)

Arguments

temperature	Temperature
mu	Exponential growth rate
method	Specify which fitting algorithm to use, 'mle2' or 'grid.mle2'
start.method	Specify method for generating starting grid for 'grid.mle2' option
plotQ	Should regression be visualized?
conf.bandQ	Should we calculate a confidence band around the regression? logical.
fpath	If visual requested, and valid file path provided here, plot will be saved as a .pdf file. Default is NA.
id	Character string providing any information ID'ing the specifc curve being fit; used to label plots, if any are requested. Default is NA.
suppress.grid.mle2.warnings	logical; should warnings arising from grid.mle2 invocation be suppressed (TRUE), or displayed (FALSE)? Default is TRUE.
...	Additional arguments passed to grid.mle2 (e.g., control=list(maxit=2000))

ctkremer/growthTools documentation built on July 27, 2021, 4:19 p.m.