Man pages for ctl43/TranSpotteR
Pipeline for identifying LINE1 insertoin in the WGS data
| annotate_contigs | Contig annotation |
| annotate_seq | Annotate sequences by aligning to different reference... |
| assemble_reads | Assemble sequences into a contig |
| cluster_reads | Clustering anchor reads, sequencing reads passing a threshold... |
| construct_contigs | Construct contigs from read clusters |
| extract_element_at | Subsetting element from a list-like type object. |
| extract_reads | Extract informative reads for insertion inference |
| import_files | Extract informative reads for insertion inference |
| merge_granges | Merging each GRanges objects in a GRangesList wihtin a... |
