Feb7_2021_3Types_Data_rna_mean_1000_ratio: Application 1: K562-GM12878 dataset

In cuhklinlab/scAMACE: scAMACE (integrative Analysis of single-cell Methylation, chromatin ACcessibility, and gene Expression)

Description

Application 1: K562-GM12878 dataset, including scCAS data, scRNA-Seq data and sc-methylation data.

Usage

data("Feb7_2021_3Types_Data_rna_mean_1000_ratio")

Format

large list (13 elements, 35.1 Mb)

atac_data

scCAS data, cells by genes.

f10ratio_acc

f1/f0 for scCAS data.

f1

the known pdf f1 of scCAS data when o=1.

f0

the known pdf f0 of scCAS data when o=0.

atac_cell

the true cell labels for scCAS data, 1: HL60 cell line, 2: K562 cell line.

rna_data

scRNA-Seq data (FPKM/TPM), cells by genes.

f10ratio_exp

g1/g0 for scRNA-Seq data.

g1

the known pdf g1 of scRNA-Seq data when v=1.

g0

the known pdf g0 of scRNA-Seq data when v=0.

rna_cell

the true cell labels for scRNA-Seq data, 1: HL60 cell line, 2: K562 cell line.

met_data

sc-methylation data, cells by genes.

f10ratio_met

h1/h0 for sc-methylation data.

met_cell

the true cell labels for sc-methylation data, 1: HL60 cell line, 2: K562 cell line.

datasets

cuhklinlab/scAMACE documentation built on Dec. 19, 2021, 7:03 p.m.