calSAMScore | Calculate SAM score |
caltScore | Calculate tScore. |
dGMGraph | The global directed gene-metabolite pathway graph. |
DRW | Directed Random Walk |
DRWPClass-GM-package | The DRW-GM method for disease classification |
evaluate.DRWPClassGM | Evaluate predictions from a "DRWPClassGM" object. |
fit.DRWPClassGM | Train a classifier using DRW-GM |
fitModel | Fitting model |
fitModelGreedy | Fitting model using a greedy search |
getMetaWeight | calculating the weights of metabolites. |
getPathActivity | inferring pathway activity |
getW0_GM | calculating the weights of genes and metabolites |
GProf3325 | Gene expression data from GSE3325. |
GProf8511 | Gene expression data from GSE8511. |
MProf | Metabolomic data |
pathSet | Pathway set. |
predict.DRWPClassGM | Make predictions from a "DRWPClassGM" object. |
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