MEM_values: MEM values

In cytolab/cytoMEM: Marker Enrichment Modeling (MEM)

MEM values

Description

This list of 5 matrices is the output generated from MEM analysis of the PBMC dataset. It is meant to be used as input for the build_heatmaps function to generate population-specific MEM labels and clustered median and MEM score heatmaps.

Usage

data(MEM_values)

Format

The format is: List of 6 $ MAGpop :List of 1 ..$ : num [1:7, 1:25] 0.0254 0.0189 0.0207 2.5075 2.4995 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ MAGref :List of 1 ..$ : num [1:7, 1:25] 0.0146 0.0209 0.0206 0.0213 0.0235 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ IQRpop :List of 1 ..$ : num [1:7, 1:25] 0.5 0.5 0.5 0.68 0.655 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ IQRref :List of 1 ..$ : num [1:7, 1:25] 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 0.5 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ MEM_matrix:List of 1 ..$ : num [1:7, 1:25] 0.014421 -0.002766 0.000195 3.309071 3.295596 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:7] "1" "2" "3" "4" ... .. .. ..$ : chr [1:25] "CD19" "CD117" "CD11b" "CD4" ... $ File Order:List of 1 ..$ : num 0

Examples

data(MEM_values)

cytolab/cytoMEM documentation built on Sept. 13, 2023, 7:28 a.m.