API for czhu/R_nanopore
Analysing Nanopore RNA-seq data
| Global functions | |
|---|---|
| IRangesList_2_tibble_psl | Source code |
| alongChromTicks | Source code |
| bivar_plot_contour | Source code |
| bivar_plot_heatscatter | Source code |
| calc_mean_qscore | Source code |
| change_header | Source code |
| chrom_plot | Source code |
| compare_plot | Source code |
| convert_num_to_range | Source code |
| default_config | Source code |
| draw_rect | Source code |
| extrac_quality | Source code |
| extractIntrons | Source code |
| extract_seq_end | Source code |
| find_adapter | Source code |
| find_hairpin | Source code |
| find_middle_adapter | Source code |
| find_polyA | Source code |
| find_polyN | Source code |
| gene_plot | Source code |
| gene_plot_log | Source code |
| gene_plot_multi_panel | Source code |
| gene_plot_single_panel | Source code |
| generate_plot_config | Source code |
| generate_randomseq | Source code |
| genome_barplot | Source code |
| get_adapter_hit | Source code |
| get_quality | Source code |
| get_seqid | Source code |
| make_bar_plot | Source code |
| map_adapter_pwa | Source code |
| matchPatternStranded | Source code |
| matchPatternWithTol | Source code |
| match_adapter | Source code |
| mutate_seq | Source code |
| mylog | Source code |
| new_vp | Source code |
| num_to_color | Source code |
| plotRanges | Source code |
| plot_config_default | Source code |
| plot_coord | Source code |
| plot_dnaseq | Source code |
| plot_feature | Source code |
| plot_feature_text | Source code |
| plot_feature_text_vpr | Source code |
| plot_feature_vpr | Source code |
| plot_length_dist | Source code |
| plot_mean_qscore_dist | Source code |
| plot_read_accumulation | Source code |
| print_seq_w_feature | Source code |
| process_plotDat | Source code |
| reduce_column | Source code |
| scaleIntronSize | Source code |
| simplify_num_output | Source code |
| stream_read_fastq | Source code |
| summarise_map_adapter_pwa | Source code |
| tibble_psl_2_IRangesList | Source code |
| trim_adapter | Source code |
| trsf_ct_nread | Source code |
| txClass_plotter | Source code |
| validate_plotDat | Source code |
| validate_plotdat | Source code |
| vmatchPattern_direct | Source code |
