|Adjusting the nominal position of a pair of partnered...
|Extracting unpartnered breakend structural variants as a...
|Converting breakpoint GRanges to BEDPE-like dataframe
|Converts the given breakpoint GRanges object to VCF format in...
|Extracting the structural variants as a GRanges.
|Calculates the length of inexact homology between the...
|Counting overlapping breakpoints between two breakpoint sets
|Extracts the element of each element at the given position
|Extracts the breakpoint sequence.
|Returns the reference sequence around the breakpoint position
|Finding overlapping breakpoints between two breakpoint sets
|Finds duplication events that are reported as inserts. As...
|Identifies potential transitive imprecise calls that can be...
|Determines whether this breakend has a valid partner in this...
|Determining whether the variant is a structural variant
|Determining whether the variant is a symbolic allele.
|Detecting nuclear mitochondria fusion events.
|Converts a breakpoint GRanges object to a Pairs object
|GRanges representing the breakend coordinates of structural...
|Detecting retrotranscript insertion in nuclear genomes.
|Length of event if interpreted as an isolated breakpoint.
|Type of simplest explanation of event. Possible types are: |...
|StructuralVariantAnnotation: a package for SV annotation
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