API for daanhazelaar/katdetectr
Detection, Characterization and Visualization of Kataegis in Sequencing Data
| Global functions | |
|---|---|
| .addKataegisIDtoVariants | Source code |
| .addKataegisIDtoVariantsPerSample | Source code |
| .addSegmentsIDtovariants | Source code |
| .annotateGenomicVariants | Source code |
| .annotateKataegisSegments | Source code |
| .annotateSegments | Source code |
| .coerceMAFtoVRanges | Source code |
| .coerceVCFtoVRanges | Source code |
| .combineData | Source code |
| .convertVariantsToGGplotFormat | Source code |
| .determineIMD | Source code |
| .determineInitialProbabilities | Source code |
| .determineKataegisFoci | Source code |
| .determineKataegisSegments | Source code |
| .determineSegmentID | Source code |
| .determineSegmentIDperChr | Source code |
| .determinefociID | Source code |
| .generateBackgroundVariants | Source code |
| .generateKataegisFoci | Source code |
| .generateKataegisVariants | Source code |
| .generateRainfallPlot | Source code |
| .getBackgroundData | Source code |
| .getIMD | Source code |
| .importGenomicVariants | Source code |
| .initkatdetect | Source code |
| .mergeKataegisSegments | Source code |
| .performChangepointDetection | Source code |
| .processGenomicVariants | Source code |
| .reduceOverlappingVariants | Source code |
| .removeValidationColumns | Source code |
| .runCD | Source code |
| .selectSequences | Source code |
| .selectSequencesgenerateSyntheticData | Source code |
| .validateInputGenerateSyntheticData | Source code |
| .validateInputRainfallPlot | Source code |
| detectKataegis | Source code |
| determineSegments | Source code |
| generateKataegisData | Source code |
| generateSyntheticData | Source code |
| getDataKataegisFoci | Source code |
| getDataKataegisVariants | Source code |
| getKataegisData | Source code |
| print.KatDetect | Source code |
| rainfallPlot | Source code |
| summary.KatDetect | Source code |
| validateInputdetectKataegis | Source code |
