===================================================================================\ R Package to visualize alignments between two or multiple DNA sequences including \ a number of functionalities to facilitate processing of alignments in PAF format.
Author: David Porubsky
To install the development version from Github, follow the steps given below. The installation has only been tested on Linux (Ubuntu) system, if you need to install on Windows or Mac-OS additional steps might be necessary.
## Install required packages
install.packages("devtools")
library(devtools)
## Install from GitHub repository
devtools::install_github("daewoooo/SVbyEye", branch="master")
See here for a detailed package usage.
If you encounter errors of any kind or want to request a new package functionality, please report an issue here.
Porubsky, David, Xavi Guitart, Dongahn Yoo, Philip C. Dishuck, William T. Harvey, and Evan E. Eichler. 2024. “SVbyEye: A Visual Tool to Characterize Structural Variation among Whole-Genome Assemblies.” bioRxiv. https://doi.org/10.1101/2024.09.11.612418.
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