unifrac2: unifrac
In daijiang/lirrr: Functions collected/wrote by Daijiang Li
unifrac2 R Documentation
unifrac
Description
calculate unifrac of pairwise site. This is based on picante::unifrac, but with phylocomr::ph_pd to calculate pd, which can improve speed dramatically.
Usage
unifrac2(comm, tree, comm_long)
Arguments
comm
A site by sp data frame, row names are site names.
tree
A phylogeny with 'phylo' class.
comm_long
A long format of comm, can be missing.
Value
A site by site distance object.
daijiang/lirrr documentation built on Feb. 3, 2024, 5:42 p.m.
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| unifrac2 | R Documentation |
unifrac
Description
calculate unifrac of pairwise site. This is based on picante::unifrac, but with phylocomr::ph_pd to calculate pd, which can improve speed dramatically.
Usage
unifrac2(comm, tree, comm_long)
Arguments
comm |
A site by sp data frame, row names are site names. |
tree |
A phylogeny with 'phylo' class. |
comm_long |
A long format of comm, can be missing. |
Value
A site by site distance object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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