genes: Genetics datasets
In dajmcdon/cplr: Compressed and penalized linear regression
Description
Usage
Format
Source
Description
Eight different genetics datasets b1, b2, b3, g1, g2, w1, w2, w3 are used in this paper
Usage
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Format
Each of the eight datasets contains 40 columns. Columns 2 through 40 contain the 20 nucleotides to the left and 19 nucleotides to the right of a particular nucleotide. The first column, count, contains the number of times those sequences were found in different RNA sequences.
The datasets beginning with b are human and originated with the Burge group http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593745/.
The datasets beginning with g are from mice and due to the Grimmond group http://www.nature.com/nmeth/journal/v5/n7/full/nmeth.1223.html.
The datasets beginning with w are also from mice and due to the Wold group http://www.nature.com/nmeth/journal/v5/n7/full/nmeth.1226.html.
Source
These data were downloaded from Prof. Jun Li and then processed using his package mseq.
dajmcdon/cplr documentation built on May 14, 2019, 3:29 p.m.
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Description Usage Format Source
Description
Eight different genetics datasets b1, b2, b3, g1, g2, w1, w2, w3 are used in this paper
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 |
Format
Each of the eight datasets contains 40 columns. Columns 2 through 40 contain the 20 nucleotides to the left and 19 nucleotides to the right of a particular nucleotide. The first column, count, contains the number of times those sequences were found in different RNA sequences.
The datasets beginning with b are human and originated with the Burge group http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593745/.
The datasets beginning with g are from mice and due to the Grimmond group http://www.nature.com/nmeth/journal/v5/n7/full/nmeth.1223.html.
The datasets beginning with w are also from mice and due to the Wold group http://www.nature.com/nmeth/journal/v5/n7/full/nmeth.1226.html.
Source
These data were downloaded from Prof. Jun Li and then processed using his package mseq.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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