README.md

In damianobaldan/riverconn: Fragmentation and Connectivity Indices for Riverscapes

riverconn

Git repository for R package rivercon.

Package documentation is available in the vignette and here: https://damianobaldan.github.io/riverconn_tutorial/

Further information on functions implemented in the package and potential uses are described in the paper: https://doi.org/10.1016/j.envsoft.2022.105470

The latest version of the package is available from GitHub: https://github.com/damianobaldan/riverconn

Installation

devtools::install_github("damianobaldan/riverconn", build_vignettes = TRUE)

Changelog

0.3.32 to 0.3.33 * fixed issue with weight_metadata object in inner_t_index_calculation

0.3.31 to 0.3.32 * default parallel computation option switched to FALSE

0.3.30 to 0.3.31 * fixed CRAN notes

0.3.29 to 0.3.30 * removed ggnetwork dependency

0.3.28 to 0.3.29 * fixed issue with param_l in inner_d_index_calculation function

0.3.27 to 0.3.28 * fixed another bug in index_calculation for index_type = "sum"; added error message

0.3.26 to 0.3.27 * fixed bug in index_calculation for index_type = "sum"

0.3.25 to 0.3.26 * fixed issue in vignette visualization

0.3.24 to 0.3.25 * fixed example in d_index_calculation function

0.3.23 to 0.3.24 * updated documentation for disp_type = "leptokurtic"

0.3.22 to 0.3.23 * added disp_type = "leptokurtic" in the index_calculation function

0.3.21 to 0.3.22 * fixed bug in index_calculation when index_type = "reach" and index_mode = "from"

0.3.20 to 0.3.21 * updated documentation and vignette

0.3.18 to 0.3.20 * updated functions documentation and vignette

0.3.17 to 0.3.18 * fixed a bug that lead to index_calculation crash when similar vertex attributes are used

0.3.16 to 0.3.17 * vignette updated

0.3.16 to 0.3.17 * DESCRIPTION file updated

0.3.15 to 0.3.16 * examples changed

0.3.14 to 0.3.15 * changed matrix-vector multiplication method in index_calculation to avoid running out of memory

0.3.13 to 0.3.14 * fixed bug in t_index_calculation for index_type = "reach"

0.3.12 to 0.3.13 * updated error messages in B_ij_fun

0.3.11 to 0.3.12 * fixed bugs in examples

0.3.7 to 0.3.11 * added examples to exported functions

0.3.7 to 0.3.10 * minor fixes for CRAN upload

0.3.6 to 0.3.7 * vignette updated

0.3.5 to 0.3.6 * added type = "sum" in index_calculation to calculate barriers attributes sum regardless of the network structure (this facilitates the calculation of area fragmentation indices)

0.3.4 to 0.3.5 * typos corrected in the documentation

0.3.3 to 0.3.4 * vignette updated and link to online guide included in the documentation

0.3.2 to 0.3.3 * term dam replaced with barrier through all the documentation and vignette

0.3.1 to 0.3.2 * vignette updated

0.2.9 to 0.3.1 * minor changes in d_index_calculation function to avoid dplyr::join printing messages to screen

0.2.8 to 0.2.9 * minor changes in d_index_calculation documentation

0.2.7 to 0.2.8 * minor changes in B_ij_fun and c_ij_fun

0.2.6 to 0.2.7 * changed architecture of B_ij_fun to improve speed (now relying on dodgr package to speed up shortest paths calculations on graphs)

0.2.5 to 0.2.6 changed architecture of c_ij_fun to improve speed (now relying on dodgr package to speed up shortest paths calculations on graphs) B_ij_fun is still the slow version

0.2.4 to 0.2.5 * edited vignette

0.2.3 to 0.2.4 fixed bug on t_index_calculation (... argument and partial match issue) added error message on index_calculation when nodes_id is not charachter type

0.2.2 to 0.2.3 * fixed bug on d_index_calculation (inputs pass_u and pass_d not recognized)

0.2.1 to 0.2.2 minor changes to functions documentation and error messages fixed bug on d_index_calculation (... argument and partial match issue)

0.1.9 to 0.2.1 changed architecture of d_index_calculation to simplify debug introduced and documented function one_barrier_removal_index

0.1.8 to 0.1.9 * fixed bug on d_index_calculation

0.1.7 to 0.1.8 fixed bug on set_c_directionality and set_B_directionality when argument "asymmetric" is provided fixed issue on index_calculation and d_index_calculation: now output labels are consistent with user-inputted labels

0.1.7 * first version on GitHub

damianobaldan/riverconn documentation built on April 6, 2024, 1:38 p.m.