Man pages for damiendevienne/lifemapr
Data Visualisation on 'Lifemap' Tree
| add_lm_branches | Compute the aesthetics for a subtree visualisation. |
| add_lm_markers | Compute the aesthetics for markers visualisation. |
| add_lm_piecharts | Compute the aesthetics for discret values visualisation. |
| build_Lifemap | A function to construct a LifemapR object, usable by the... |
| create_matrix | Create a dataframe for the ancestry. |
| create_value_range | Compute a new scale for a value |
| display_map | Create a Lifemap base. |
| display_option | Compute the different display options. |
| draw_Lifemap | Represent data on a Lifemap basemap. |
| eukaryotes_1000 | NCBI information for 1000 eukaryotes |
| eukaryotes_80 | NCBI information for 80 eukaryotes |
| gen_res | Genomic results |
| is.lifemap_obj | Reports whether x is a lifemap_obj object. |
| is.lm_branches | Reports whether x is a lm_branches object. |
| is.lm_markers | Reports whether x is a lm_markers object. |
| is.lm_piecharts | Reports whether x is a lm_branches object. |
| kraken_res | Kraken results |
| lifemap | Initialise a new Lifemap visualisation. |
| lm_branches | Add a "branches" layer to a lifemap_obj object. |
| LM_eukaryotes | Transformation in a LifemapR format of NCBI information for... |
| lm_markers | add a "markers" layer to a lifemap_obj object. |
| lm_piecharts | Add a "piecharts" layer to a lifemap_obj object. |
| make_newick | Create a newick for the given dataset. |
| pass_infos | Infer numerical values to nodes. |
| pass_infos_discret | Infer discret values to nodes for lm_piecharts function. |
| plus-.lifemap_obj | Add a graphical element to a tree visualisation. |
| print.lifemap_obj | Method to print lifemap_obj objects. |
