DNA_sequence_cos: Obtain all mutations codons

In dancelestini/MutationalSignature: What the Package Does (One Line, Title Case)

Description

This function will load all the CDS from the mutated genes in the input file. Then recovery the 3' and 5' nucleotide aside of the mutation site.

Usage

DNA_sequence_cos(cosmic, num = length(cosmic$GENE_NAME))

Arguments

cosmic	Dataframe output from the import_data_cos function
num	The number of patient you want to analyse. Default will go through all the dataset.

Value

DNA_seq = CDS sequence for all the genes used, codon_part = codon around mutation.

dancelestini/MutationalSignature documentation built on Dec. 19, 2021, 8:05 p.m.