analyze_locus: Extract Locus Information from VCF Data for HAD Format

In dandewaters/VCF2Ploidy: VCF File Converter

Description

A function used to fill the HAD converted data frame with the number of reads on each allele for heterozygous loci. Not exported.

Usage

analyze_locus(locus, remove_double_hets = FALSE)

Arguments

locus	A character string of the locus information from a column of the VCF data frame.
remove_double_hets	Logical for determining if double heterozygous loci should be treated as missing information.

Value

A numeric vector of the number of reads for each allele at heterozygous loci.

Examples

## Not run: analyze_locus("1/0:8:0,6,0,2", remove_double_hets=TRUE)

dandewaters/VCF2Ploidy documentation built on Jan. 17, 2021, 2:12 p.m.