plot_barcode_tree: Plot for barcode-tree
In danielalcaide/mclean: Multilevel Clustering Exploration As Network

Description Usage Arguments Author(s) References Examples

View source: R/plot_barcode_tree.R

Generate a plot created with ggplot2 to represent the evolution of connected components along threshold.

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plot_barcode_tree(components, x_variable = "threshold",
  y_varaible = "plot_components", group_varaible = "id", size = 0.15,
  alpha = 0.7)

`components`	data frame; output from barcode_tree function
`x_variable`	string defining the x axis of the plot. This dimension is reserved for the threshold.
`y_varaible`	string defining the y axis of the plot. This dimension is reserved for the id of connected components.
`group_varaible`	stirng defining the grouping variable of the data elements; `id` by default
`size`	number; size of the line.
`alpha`	number; opacity of the line.

Daniel Alcaide, daniel.alcaide@esat.kuleuven.be

Alcaide D, Aerts J. (2018) MCLEAN: Multilevel Clustering Exploration As Network. PeerJ Computer Science 4:e145 https://doi.org/10.7717/peerj-cs.145

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data("synthetic_distances")
barcode_tree = barcode_tree( distance_matrix = synthetic_distances, sequence = seq(from=100,to=300,by=25))
plot_barcode_tree(barcode_tree)