API for danielschw188/Revelio
| Global functions | |
|---|---|
| alignCellCycleToPreviousWeights | Source code |
| alignCellDivisionToXAxis | Source code |
| calculateAverageUMIPerIntervalBasedOnIndex | Source code |
| calculateCCScoreSingleDimension | Source code |
| calculateOptimalRotation | Source code |
| calculateOutliersInVector | Source code |
| calculateRNAvelocity | Source code |
| calculateVariableGenes | Source code |
| cellCyclePhaseAssign | Source code |
| createRevelioObject | Man page Source code |
| doPCA | Source code |
| euclideanDistance | Source code |
| extrapolatedStateFromVelocityModelI | Source code |
| gammaEstimation | Source code |
| getBestViewingAxisMinimizingDispersionInThirdDimension | Source code |
| getBordersAndMiddlesAlongAngleVectorForSpecificNumberOfIntervals | Source code |
| getCCSorting | Source code |
| getCartesianCoordinates | Source code |
| getCellCyclePhaseAssignInformation | Man page Source code |
| getCellCycleScoreForPCA | Source code |
| getExtrapolatedStateInDCSpace | Man page Source code |
| getFilteredDataByCCPhaseAssignOutliers | Source code |
| getFilteredDataBynUMIAndnGeneThresholds | Source code |
| getGoldenSpiral | Source code |
| getGridAroundAxis | Source code |
| getIdealizedCell | Source code |
| getLogOfFractionsData | Source code |
| getNormalizedData | Source code |
| getNormalizedDataBySpecificVector | Source code |
| getOptimalRotation | Man page Source code |
| getPCAData | Man page Source code |
| getPCAGenes | Source code |
| getPolarCoordinates | Source code |
| getRotation2D | Source code |
| getRotationMatrix3D | Source code |
| getScaledDataFromLogOfFractions | Source code |
| getStatisticsOnCellsAndGenes | Source code |
| getVariableGenes | Source code |
| getVelocityGridAlongThirdDimensions | Man page Source code |
| getVelocityGridCC | Man page Source code |
| getVelocityGridForIdealizedCell | Source code |
| getVelocityMatrix | Man page Source code |
| includeIntronicDataAndFilter | Source code |
| offsetEstimation | Source code |
| plotVelocityOnAveragedTrajectory | Man page Source code |
| removeCCEffects | Man page Source code |
| revelioTestData_cyclicGenes | Man page |
| revelioTestData_rawDataMatrix | Man page |
| revelioTestData_rawIntronicMatrix | Man page |
| transformExtrapolatedStateModelIToRotatedPCA | Source code |
