getExtrapolatedStateInDCSpace: Transform the extrapolated space from RNA velocity into RNA...
In danielschw188/Revelio:

Description Usage Arguments Details Value

'getExtrapolatedStateInDCSpace' calculates the extrapolated state of each cells and transforms it into the coordinate system of the dynamical components.

1	getExtrapolatedStateInDCSpace(dataList)

dataList

A Revelio object that contains a rotation matrix and a velocity matrix.

For each cell the extrapolated state is calculated (using the RNA velocity matrix calculated previously) via the model s_ij=s_ij+v. This extrapolated state is then transformed into the dynamical component space using the same transformation matrices generated by only the exonic data.

Returns the same Revelio object given as input but additionally with the coordinates of the extrapolated state in DC space.

danielschw188/Revelio documentation built on April 30, 2021, 1:02 p.m.