..pdf
.Rbuildignore
.Rproj.user/3FAFD4B5/build_options
.Rproj.user/3FAFD4B5/cpp-definition-cache
.Rproj.user/3FAFD4B5/pcs/debug-breakpoints.pper
.Rproj.user/3FAFD4B5/pcs/files-pane.pper
.Rproj.user/3FAFD4B5/pcs/source-pane.pper
.Rproj.user/3FAFD4B5/pcs/windowlayoutstate.pper
.Rproj.user/3FAFD4B5/pcs/workbench-pane.pper
.Rproj.user/3FAFD4B5/rmd-outputs
.Rproj.user/3FAFD4B5/saved_source_markers
.Rproj.user/3FAFD4B5/sources/prop/1876ACB7
.Rproj.user/3FAFD4B5/sources/prop/2118E81E
.Rproj.user/3FAFD4B5/sources/prop/21FF2B38
.Rproj.user/3FAFD4B5/sources/prop/32AA0D94
.Rproj.user/3FAFD4B5/sources/prop/3BE08DE3
.Rproj.user/3FAFD4B5/sources/prop/44C2BB0
.Rproj.user/3FAFD4B5/sources/prop/4CD6FB65
.Rproj.user/3FAFD4B5/sources/prop/514F4A9F
.Rproj.user/3FAFD4B5/sources/prop/5151FAB6
.Rproj.user/3FAFD4B5/sources/prop/5C4E5F85
.Rproj.user/3FAFD4B5/sources/prop/5DB8E4D9
.Rproj.user/3FAFD4B5/sources/prop/6A85B36E
.Rproj.user/3FAFD4B5/sources/prop/6B8DD001
.Rproj.user/3FAFD4B5/sources/prop/81E18564
.Rproj.user/3FAFD4B5/sources/prop/8BAC0457
.Rproj.user/3FAFD4B5/sources/prop/AB9DD94C
.Rproj.user/3FAFD4B5/sources/prop/C21F665A
.Rproj.user/3FAFD4B5/sources/prop/C6B38627
.Rproj.user/3FAFD4B5/sources/prop/C809C71C
.Rproj.user/3FAFD4B5/sources/prop/C80F816A
.Rproj.user/3FAFD4B5/sources/prop/DCDA8BD4
.Rproj.user/3FAFD4B5/sources/prop/DF01E09
.Rproj.user/3FAFD4B5/sources/prop/E7C820A6
.Rproj.user/3FAFD4B5/sources/prop/F4664D47
.Rproj.user/3FAFD4B5/sources/prop/FF1D555F
.Rproj.user/3FAFD4B5/sources/prop/INDEX
.Rproj.user/4D1265AC/sources/prop/30CCE13
.Rproj.user/4D1265AC/sources/prop/4381E92C
.Rproj.user/4D1265AC/sources/prop/5712AE5E
.Rproj.user/4D1265AC/sources/prop/69F68FC3
.Rproj.user/4D1265AC/sources/prop/6FEBBC6E
.Rproj.user/4D1265AC/sources/prop/94C14647
.Rproj.user/4D1265AC/sources/prop/996DAB3B
.Rproj.user/4D1265AC/sources/prop/9A22E339
.Rproj.user/4D1265AC/sources/prop/D4A893ED
.Rproj.user/4D1265AC/sources/prop/E987CA0C
.Rproj.user/4D1265AC/sources/prop/EF74389B
.Rproj.user/4D1265AC/sources/prop/INDEX
.Rproj.user/4D1265AC/sources/s-8FA36230/187F6070
.Rproj.user/4D1265AC/sources/s-8FA36230/187F6070-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/191C3B3B-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/4DDE8E5A
.Rproj.user/4D1265AC/sources/s-8FA36230/4DDE8E5A-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/728A7BA5-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/9613DB7B-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/9D80466C-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/A0AA40D2-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/BB220F0C
.Rproj.user/4D1265AC/sources/s-8FA36230/BB220F0C-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/BD24C6FE-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/BEA5DD8E-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/FAE12CE1-contents
.Rproj.user/4D1265AC/sources/s-8FA36230/lock_file
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
Documentation.pdf
LICENSE
NAMESPACE
R/af_split.R
R/back_convert.Internal.R
R/check_allele_frequency_input.R
R/genotype_finder.R
R/read_in_af_data.R
R/run_App.R
R/sim_single_locus.R
R/sim_single_sample.R
R/simulate_admixture.R
R/stitch.R
R/string_to_vector.R
R/summarise_admixture.R
R/write_to_structure.R
README.md
SimAdmixtR.Rproj
inst/example-files/example_simulation_details-three-populations.csv
inst/example-files/example_simulation_details.csv
inst/example-files/input-allele-frequencies-three-snps-three-populations.csv
inst/example-files/input-allele-frequencies-three-snps.csv
inst/example-files/input-allele-frequencies.csv
inst/example-files/simple-three-allele-example.csv
inst/shiny-apps/basic-ui/app.R
inst/shiny-apps/basic-ui/server.R
inst/shiny-apps/basic-ui/ui.R
man/af_split.Rd
man/back_convert.Internal.Rd
man/check_allele_frequency_input.Rd
man/genotype_finder.Rd
man/read_in_af_data.Rd
man/run_App.Rd
man/sim_single_locus.Rd
man/sim_single_sample.Rd
man/simulate_admixture.Rd
man/stitch.Rd
man/string_to_vector.Rd
man/summarise_admixture.Rd
man/write_to_structure.Rd
vignettes/.gitignore
vignettes/simulation-details.Rmd
vignettes/validation-observed-vs-expected.Rmd