summarise_admixture: Function finds the genotype frequencies for a simulated...

In danwkenn/SimAdmixtR: Simulates a set of admixed diploid genotypes based on SNP allele frequencies

Description

Function finds the genotype frequencies for a simulated data-list, and the most likely genotype for each SNP.

Usage

summarise_admixture(data_list, pop_allele_file)

Arguments

data_list	Simulated data output from simulate_admixture.
pop_allele_file	Path to CSV file containing the population allele frequencies.

Value

A list containing:

• frequencies: A list of vectors, with one element for each SNP. The vectors have a single element for each possible genotype, and the value is the observed frequency of that genotype in the simulated data.

• most_common: a matrix of the most common genotype found in the sample.

danwkenn/SimAdmixtR documentation built on May 30, 2020, 7:25 a.m.