Files in dariamed/gjamed
What the package does (short line)

.DS_Store

.RData

.Rapp.history

.Rbuildignore

.Rhistory

.Rproj.user/B25915CF/console06/INDEX001

.Rproj.user/B25915CF/cpp-complilation-config

.Rproj.user/B25915CF/cpp-definition-cache

.Rproj.user/B25915CF/pcs/debug-breakpoints.pper

.Rproj.user/B25915CF/pcs/files-pane.pper

.Rproj.user/B25915CF/pcs/source-pane.pper

.Rproj.user/B25915CF/pcs/windowlayoutstate.pper

.Rproj.user/B25915CF/pcs/workbench-pane.pper

.Rproj.user/B25915CF/persistent-state

.Rproj.user/B25915CF/rmd-outputs

.Rproj.user/B25915CF/saved_source_markers

.Rproj.user/B25915CF/sources/prop/5F48E73C

.Rproj.user/B25915CF/sources/prop/7BD75155

.Rproj.user/B25915CF/sources/prop/9FA1A24B

.Rproj.user/B25915CF/sources/prop/A56030EE

.Rproj.user/B25915CF/sources/prop/B0987EF3

.Rproj.user/B25915CF/sources/prop/INDEX

.Rproj.user/B25915CF/sources/s-C2A44BA/14B4B7A2

.Rproj.user/B25915CF/sources/s-C2A44BA/14B4B7A2-contents

.Rproj.user/B25915CF/sources/s-C2A44BA/4B826BB3

.Rproj.user/B25915CF/sources/s-C2A44BA/4B826BB3-contents

.Rproj.user/B25915CF/sources/s-C2A44BA/C6E43DB5

.Rproj.user/B25915CF/sources/s-C2A44BA/C6E43DB5-contents

.Rproj.user/B25915CF/sources/s-C2A44BA/D55CF224-contents

.Rproj.user/B25915CF/sources/s-C2A44BA/F28387FC-contents

.Rproj.user/B25915CF/sources/s-C2A44BA/lock_file

.Rproj.user/shared/notebooks/64363E2F-jsdm_test_2/1/B25915CFC2A44BA/chunks.json

.Rproj.user/shared/notebooks/64363E2F-jsdm_test_2/1/s/csetup_chunk/000004.csv

.Rproj.user/shared/notebooks/64363E2F-jsdm_test_2/1/s/csetup_chunk/000005.error

.Rproj.user/shared/notebooks/patch-chunk-names

.Rproj.user/shared/notebooks/paths

B_data_model_run.R Bagues_10_k.pdf Bagues_10_kr10.pdf Bagues_run_gjam.R Bagues_run_gjam_new.R Bagues_run_gjam_new_19.R Bagues_run_gjam_new_19_AB.R Bagues_run_gjam_new_bio12.R Bagues_run_gjam_new_vs 2.R Bagues_run_gjam_new_vs.R Bagues_run_gjam_old.R Bagues_run_gjam_щдв.R

Bauges.zone.env.stk.CALIB.RData

Bauges.zone.env.stk.PROJ.RData

Bauges_data_all_10K_bio19.pdf Bauges_data_all_trace_pca.pdf

DB.XY.RData

DB.XY.RData.html

DESCRIPTION

DOM.mat.sites.species.PA.RData

DOM.mat.sites.species.abund.RData

DP_mix.Rmd

DP_mix.nb.html

EIG.txt

ENV_VARIABLES/.DS_Store

ENV_VARIABLES/EOBS_1970_2005/aspect.tif

ENV_VARIABLES/EOBS_1970_2005/bio_10_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_11_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_12_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_13_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_14_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_15_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_16_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_17_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_18_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_19_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_1_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_2_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_3_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_4_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_5_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_6_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_7_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_8_0.tif

ENV_VARIABLES/EOBS_1970_2005/bio_9_0.tif

ENV_VARIABLES/EOBS_1970_2005/dem.tif

ENV_VARIABLES/EOBS_1970_2005/slope.tif

ENV_VARIABLES/EOBS_1970_2005/tave_summer_0.tif

ENV_VARIABLES/EOBS_1970_2005/tave_winter_0.tif

Fin_10k_1.csv

Fin_10k_19.csv

Gaus_mixture_fixed.R Gauss.R GibbsType.Rmd

GibbsType.html

GlassoSecond.pdf.html

Kolmogorov_dist.R

MASK_100m.tif

MASK_100m.tif.html

MHfunction_alpha.R MullerRod_w_tables.R MullerRod_wtables_mod.R MullerRogrigues_working.R MullerRorgiguez.R Muller_examples.R

NAMESPACE

OD2Sim_smallS1000K10_type1.Rda

OD2Sim_smallS1000K10_type4.Rda

ODBIGS1000K4_gjam0.Rda

ODSim_smallS1000K_10_gjam0.Rda

ODSim_smallS1000K_10_type1.Rda

ODSim_smallS1000K_10_type2.Rda

ODSim_smallS1000K_10_type3.Rda

ODSim_smallS1000K_10_type4.Rda

ODSim_smallS100K10_gjam0.Rda

ODSim_smallS100K4_gjam0.Rda

ODSim_smallS100K4_type1.Rda

ODSim_smallS100K4_type2.Rda

ODSim_smallS100K4_type3.Rda

ODSim_smallS100K4_type4.Rda

ODSim_smallSK10_gjam.Rda

ODSim_smallSK10_gjam0.Rda

ODSim_smallSK10_type1.Rda

ODSim_smallSK10_type2.Rda

ODSim_smallSK10_type3.Rda

ODSim_smallSK10_type4.Rda

PFG_Bauges_Description_2017.csv

PFG_Bauges_Description_2017.csv.html

PY_mix.Rmd

PY_mix.nb.html

Posterior_density_alphaDP 4.pdf

R/.Rhistory

R/RcppExports.R R/gjam.r R/gjamCensorY.r R/gjamDeZero.r R/gjamHfunctions.R R/gjamHfunctions_mod.R R/gjamIIE.r R/gjamIIEplot.r R/gjamOrdination.R R/gjamPlot.r R/gjamPoints2Grid.R R/gjamPredict.r R/gjamPriorTemplate.r R/gjamReZero.r R/gjamSimData.r R/gjamSpec2Trait.r R/gjamTrimY.r R/simple_gjam_0.R R/simple_gjam_00.R R/simple_gjam_1.R R/simple_gjam_2.R R/simple_gjam_3.R R/simple_gjam_4.R R/simul_test.R

Read-and-delete-me

Rplot_gjam.png

Rplot_gjam2.png

Running_check_list.txt

Sim_smallSK4_gjam.Rda

Sim_smallSK4_gjam0.Rda

Sim_smallSK4_type2.Rda

Sim_smallSK4_type3.Rda

Sim_smallSK4_type4.Rda

Sim_smallS_gjam0.Rda

Sim_smallS_type4.Rda

Sim_smallS_type5.Rda

Simulation_for_gjam4_sigma_plots.R Test_sim_function_file.R Untitled.R alpha_plot.R building_summary_plots.R compute_tau_functions.R

data/DS_S_1000_q_20_n_500_10.Rda

data/DS_S_100_q_20_n_500_10.Rda

data/DS_S_100_q_20_n_500_10l_1.Rda

data/DS_S_100_q_20_n_500_50.Rda

data/DS_S_100_q_20_n_500_8_.Rda

data/DS_S_200_q_20_n_500_10.Rda

data/DS_S_20_q_20_n_500_10.Rda

data/DS_S_20_q_20_n_500_4.Rda

data/DS_S_20_q_20_n_500_8_.Rda

data/DS_S_500_q_20_n_500_10l_1.Rda

data/DS_S_50_q_20_n_500_10.Rda

data/DS_S_50_q_20_n_500_4.Rda

data/DS_S_50_q_20_n_500_8_.Rda

data/DS_S_80_q_20_n_500_4.Rda

data/DS_S_80_q_20_n_500_8_.Rda

data__norm_pca.Rds

forestdata_PA.R functions_Vng_Gen_coef.R

gjamedit.Rproj

man/gjam.Rd man/gjamCensorY.Rd man/gjamDeZero.Rd man/gjamFillMissingTimes.Rd man/gjamIIE.Rd man/gjamIIEplot.Rd man/gjamOrdination.Rd man/gjamPlot.Rd man/gjamPoints2Grid.Rd man/gjamPredict.Rd man/gjamPriorTemplate.Rd man/gjamReZero.Rd man/gjamSensitivity.Rd man/gjamSimData.Rd man/gjamSpec2Trait.Rd man/gjamTrimY.Rd man/gjamedit-package.Rd metropPY.R

models_Bagues_data_OSS/fit.Rda

models_Bagues_data_OSS/fit2.Rda

models_Bagues_data_OSS/fit2_2.Rda

models_Bagues_data_OSS/fit3.Rda

models_Bagues_data_OSS/fit3_2.Rda

models_Bagues_data_OSS/fit4.Rda

models_Bagues_data_OSS/fit4_2.Rda

models_Bagues_data_OSS/fit_2.Rda

new_sim_bigS.R new_sim_smalln.R plot_forest_data/Bauges_data_all_10K.pdf plot_forest_data/Bauges_data_all_10K_pca.pdf plot_forest_data/Bauges_data_trace_K.pdf plot_forest_data/forest_data_trace_K.pdf

plots/.DS_Store

plots/Clust_prop_gr10SmallS100_1000.pdf plots/Clust_prop_gr10SmallS100_1000K10.pdf plots/Clust_prop_gr4SmallS.pdf plots/Clust_prop_gr4SmallS100_1000.pdf plots/Clust_prop_gr4SmallS100_1000K10.pdf

plots/Errors.png

plots/Exp_numK_DP.pdf plots/Exp_numK_PY.pdf plots/Fit_error_gr4SmallS.pdf plots/Ind_GJAM0_average.pdf plots/Ind_GJAM1_average.pdf plots/Ind_GJAM2_average.pdf plots/Ind_GJAM3_average.pdf plots/Ind_GJAM4_average.pdf plots/Ind_GJAM_average.pdf

plots/Mean2sdQ.png

plots/Mean2sdQ05.png

plots/MeanQ.png

plots/POSTER_plot.pdf plots/POSTER_plot_all.pdf

plots/PYprior_approx.csv

plots/Variance.png

plots/WeightsK10.csv

plots/Weights_gr10SmallS100_1000.pdf plots/Weights_gr4SmallS.pdf plots/Weights_gr4SmallS1000.pdf plots/Weights_gr4SmallS100_1000.pdf plots/forest_data_trace_K.pdf plots/with_mean_CLUST_LAST_S_100 r=5 Ktr=10.pdf plots/with_mean_POST_MEAN_CLUST_S_100 r=5 Ktr=10.pdf plots/with_mean_SIGMA_ERROR_S_100 r=5 Ktr=10.pdf

sample_data_test.Rds

sample_data_test2.Rds

sample_data_test4.Rds

sample_data_test5.Rds

sample_data_test_19.Rds

sample_data_test_pca.Rds

sample_data_train.Rds

sample_data_train2.Rds

sample_data_train4.Rds

sample_data_train5.Rds

sample_data_train_19.Rds

sample_data_train_pca.Rds

sample_y_19.Rds

sara.R sigma_post/Posterior_density_sigmaS200T4.pdf sigma_post/Posterior_density_sigmaT4.pdf sigma_post/Posterior_weights_all.pdf

sigma_post/Sigma_mod100K10_type4.Rda

sigma_post/Sigma_mod200K10_type4.Rda

simulation_JSDM_on_different_datasets.R simulation_SmS.R simulation_SmallS_one_dataset.R simulation_data_trace_K.pdf simulation_data_trace_KS300.pdf simulation_gjam_tests.R simulations_binary_type.R simulations_with_mean.R

smallnODSim_smallS100K4_gjam0.Rda

smallnODSim_smallS100K4_type1.Rda

smallnODSim_smallS100K4_type2.Rda

smallnODSim_smallS100K4_type3.Rda

smallnODSim_smallS100K4_type4.Rda

smallnODSim_smallS300K4_gjam0.Rda

smallnODSim_smallS300K4_type1.Rda

smallnODSim_smallS300K4_type2.Rda

smallnODSim_smallS300K4_type3.Rda

smallnODSim_smallS300K4_type4.Rda

src/.DS_Store

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RcppExports.o

src/cppFns.cpp

src/cppFns.o

src/gjamedit.so

src/rcpparma_hello_world.cpp

src/rcpparma_hello_world.o

summary_weight_plots.R

table_K_10_S_100_r_5_mean.rda

table_K_10_S_500_r_5.rda

tablecompS100.Rds

tablecompS1000.Rds

tablecompS1000_all.rds

tablecompS1000_cor.Rds

tablecompS100_1000.Rds

tablecompS100_cor.Rds

tablecompS200.Rds

tablecompS300_cor.Rds

tablecompS500.Rds

tablecompS500_cor.Rds

test.R test_500.R test_PY_mix.Rmd

test_PY_mix.nb.html

test_forest_data.R test_new_GJAM_forest_data.R

weights_models/Weights.csv

weights_models/weightsODSim_smallS300K40_gjam0.Rda

weights_models/weightsODSim_smallS300K40_type1.Rda

weights_models/weightsODSim_smallS300K40_type2.Rda

weights_models/weightsODSim_smallS300K40_type3.Rda

weights_models/weightsODSim_smallS50K4_gjam0.Rda

weights_models/weightsODSim_smallS50K4_type1.Rda

weights_models/weightsODSim_smallS50K4_type2.Rda

weights_models/weightsODSim_smallS50K4_type3.Rda

weights_models/weightsODSim_smallS50K4_type4.Rda

weights_tablecompS100K10.Rds

weights_tablecompS300K20.Rds

weights_tablecompS500K50.Rds

xxx.pdf

dariamed/gjamed documentation built on Sept. 27, 2019, 5:31 p.m.

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dariamed/gjamed
What the package does (short line)

Files in dariamed/gjamed
What the package does (short line)

R Package Documentation

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dariamed/gjamed What the package does (short line)

Files in dariamed/gjamed What the package does (short line)

R Package Documentation

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We want your feedback!

dariamed/gjamed
What the package does (short line)

Files in dariamed/gjamed
What the package does (short line)