queryNet: Query the Bayesian network

In dariomasante/bnspatial: Spatial Implementation of Bayesian Networks and Mapping

Description

This function queries the Bayesian network and returns the probabilities for each state of the target node. Available input variables are set as evidence.
queryNetParallel works as queryNet, but makes use of multi cores/processors facilities for big network queries, by splitting data into chunks and processing them in parallel.

Usage

queryNet(network, target, evidence, ...)

queryNetParallel(network, target, evidence, inparallel = TRUE, ...)

Arguments

network	The Bayesian network. An object of class grain, or a character (the path to the .net file to be loaded)
target	character. The node of interest to be modelled and mapped.
evidence	matrix or data.frame. Named columns are the known input variables; rows are the discrete states associated to them for each record (NA allowed).
...	Additional arguments to force one or more nodes to a state (i.e. fixing evidence). If the node is associated to any input spatial data, the latter will be ignored, thus resulting spatially equal everywhere. Node name must be provided as argument and the associated fixed state as character; both node and state names must be typed exactly as their names in the network.
inparallel	logical or integer. Number of cores to be used by queryNetParallel. Default is TRUE, so the maximum number available minus one is set.

Value

A matrix of probabilities: columns are the states of the target node and rows are the probabilities associated to each record (i.e. spatial locations) from evidence.

Examples

list2env(ConwyData, environment())

network <- LandUseChange

q <- queryNet(network, 'FinalLULC', evidence)
head(q)

## Fix a given node on a state (i.e. fixed evidence) by providing an additional argument
q <- queryNet(network, 'FinalLULC', evidence, Stakeholders = 'farmers')
head(q)

## Fix evidence for two nodes, including one of the spatial inputs (i.e. overriden by evidence)
q <- queryNet(network, 'FinalLULC', evidence, Stakeholders = 'farmers', CurrentLULC = 'forest')
head(q)
## For a programmatic approach, the arguments could be passed as named list:
# lst <- list(Stakeholders = 'farmers', CurrentLULC = 'forest')
# queryNet(network, 'FinalLULC', evidence, lst)

## Use parallel processing
q <- queryNetParallel(network, 'FinalLULC', evidence, inparallel=2)
head(q)

dariomasante/bnspatial documentation built on Aug. 25, 2020, 4:07 p.m.